YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30259868, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	958 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30259868, gi|....

Description	E-value	Query Range	Subject Range
gi\|52140399, gi\|... - gi\|52140399\|ref\|YP_086430.1\| excinuclease ABC subunit A [Bacillus cereus E33L], gi\|51973868\|gb\|AAU15...	0.0	[1..958]	[1..958]
gi\|228936449, gi... - gi\|228936449\|ref\|ZP_04099247.1\| UvrABC system protein A [Bacillus thuringiensis serovar andalousiens... gi\|49331937, gi\|... - gi\|49480381\|ref\|YP_039153.1\| excinuclease ABC subunit A [Bacillus thuringiensis serovar konkukian st...	0.0	[1..958]	[1..958]
gi\|42740248, gi\|... - gi\|42784317\|ref\|NP_981564.1\| excinuclease ABC subunit A [Bacillus cereus ATCC 10987], gi\|42740248\|gb...	0.0	[1..958]	[1..958]
gi\|229147690, gi... - gi\|229147690\|ref\|ZP_04276033.1\| UvrABC system protein A [Bacillus cereus BDRD-ST24], gi\|228635703\|gb... gi\|29898760, gi\|... - gi\|30023200\|ref\|NP_834831.1\| excinuclease ABC subunit A [Bacillus cereus ATCC 14579], gi\|29898760\|gb... gi\|228653109, gi... - gi\|229130410\|ref\|ZP_04259368.1\| UvrABC system protein A [Bacillus cereus BDRD-Cer4], gi\|228653109\|gb...	0.0	[1..958]	[1..958]
gi\|47554836, gi\|... - gi\|47569267\|ref\|ZP_00239952.1\| excinuclease ABC, A subunit [Bacillus cereus G9241], gi\|47568445\|ref\|...	0.0	[1..958]	[4..961]
gi\|89157044, gi\|... - gi\|89205030\|ref\|ZP_01183603.1\| Excinuclease ABC, A subunit [Bacillus weihenstephanensis KBAB4], gi\|8... gi\|229169868, gi... - gi\|229169868\|ref\|ZP_04297564.1\| UvrABC system protein A [Bacillus cereus AH621], gi\|228613582\|gb\|EEK...	0.0	[4..958]	[2..956]
gi\|89150792, gi\|... - gi\|89201205\|ref\|ZP_01179951.1\| Excinuclease ABC, A subunit [Bacillus cereus subsp. cytotoxis NVH 391...	0.0	[4..956]	[2..954]
gi\|56381462, gi\|... - gi\|56421620\|ref\|YP_148938.1\| excinuclease ABC subunit A [Geobacillus kaustophilus HTA426], gi\|563814...	0.0	[6..955]	[5..954]
gi\|13591422 - gi\|13591422\|gb\|AAK29748.1\| DNA repair protein UvrA [Bacillus caldotenax]	0.0	[6..955]	[2..951]
gi\|77996706, gi\|... - gi\|78044591\|ref\|YP_359131.1\| excinuclease ABC, A subunit [Carboxydothermus hydrogenoformans Z-2901],...	0.0	[6..942]	[2..940]

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Predicted Domain #1

Region A:
Residues: [1-272]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKSKDFIVV KGARAHNLKN IDVTIPRNQL VVVTGLSGSG KSSLAFDTIY AEGQRRYVES  60
   61 LSAYARQFLG QMDKPDVDTI EGLSPAISID QKTTSRNPRS TVGTVTEIYD YLRLLFARIG 120
  121 TPICPNHGIE ITSQTVEQMV DRVLEYPERT KLQVLAPIVS GRKGAHVKVL EDIKKQGYVR 180
  181 VRVDGEMLDV SEDIALDKNK KHSIEVVIDR IVVKEGIASR LADSLESALK LGGGRVLIDV 240
  241 MGEEELLFSE HHACPHCGFS IGELEPRMFS FN

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	4.41
Match:	2pcjA
Description:	No description for 2pcjA was found.

Predicted Domain #2

Region A:
Residues: [273-367]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SPFGACPSCD GLGSKLEVDL ELVIPNWDLS LNEHAIAPWE PTSSQYYPQL LQSVCNHYGV  60
   61 DMDVPVKDIP KDLFDKVLYG SGEEKVYFRY VNEFG

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [368-597]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QVKENEILFE GVIPNIERRY RETSSDYIRE QMEKYMAEQA CPKCKGGRLK PESLAVFVGG  60
   61 KTIADVTKYS VQEVQEFFSN VELTEKQQKI AHLILREIQE RVGFLVNVGL DYLTLSRAAG 120
  121 TLSGGEAQRI RLATQIGSRL TGVLYILDEP SIGLHQRDND RLIRTLQEMR DLGNTLIVVE 180
  181 HDEDTMMAAD YLLDIGPGAG IHGGQVVSAG TPAEVMQDEN SLTGKYLSGK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	59.69897
Match:	1z47A
Description:	Structure of the ATPase subunit CysA of the putative sulfate ATP-binding cassette (ABC) transporter from Alicyclobacillus acidocaldarius
Matching Structure (courtesy of the PDB):

Predicted Domain #4

Region A:
Residues: [598-667]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EFIPVPLERR KGDGRKVEIV GAKENNLKNA KMSFPLGTFV AVTGVSGSGK STMINEVLYK  60
   61 SLAQKLYKAK

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	2.52
Match:	2d2eA
Description:	Crystal structure of atypical cytoplasmic ABC-ATPase SufC from Thermus thermophilus HB8
Matching Structure (courtesy of the PDB):

Predicted Domain #5

Region A:
Residues: [668-958]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AKPGTHKEIK GLEHLDKVID IDQSPIGRTP RSNPATYTGV FDDIRDVFAQ TNEAKVRGYQ  60
   61 KGRFSFNVKG GRCEACRGDG IIKIEMHFLP DVYVPCEVCH GKRYNRETLE VKYKDKNISE 120
  121 VLGMTIEDGV EFFANIPKIK RKLQTLVDVG LGYMKLGQPA TTLSGGEAQR VKLASELHRR 180
  181 STGRTLYILD EPTTGLHAHD IARLLEVLQR LVESGETVLV IEHNLDVIKT ADYIVDLGPE 240
  241 GGDKGGQIVA SGTPEQVVKE ERSYTGKYLK EILNRDKARM KEKIKEVELS Q

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	51.39794
Match:	2hydA
Description:	No description for 2hydA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits