YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30259789, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	392 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30259789, gi|....

Description	E-value	Query Range	Subject Range
gi\|229199215, gi... - gi\|229199215\|ref\|ZP_04325895.1\| NADH dehydrogenase-like protein yjlD [Bacillus cereus m1293], gi\|228... gi\|229187313, gi... - gi\|229187313\|ref\|ZP_04314457.1\| NADH dehydrogenase-like protein yjlD [Bacillus cereus BGSC 6E1], gi\|... gi\|229141802, gi... - gi\|229141802\|ref\|ZP_04270330.1\| NADH dehydrogenase-like protein yjlD [Bacillus cereus BDRD-ST26], gi... gi\|229124607, gi... - gi\|229124607\|ref\|ZP_04253792.1\| NADH dehydrogenase-like protein yjlD [Bacillus cereus 95/8201], gi\|2... gi\|221242577, gi... - gi\|222098518\|ref\|YP_002532576.1\| pyridine nucleotide-disulphide oxidoreductase [Bacillus cereus Q1],... gi\|218535670, gi... - gi\|218906266\|ref\|YP_002454100.1\| pyridine nucleotide-disulphide oxidoreductase [Bacillus cereus AH82... gi\|217063138, gi... - gi\|217962549\|ref\|YP_002341121.1\| pyridine nucleotide-disulphide oxidoreductase [Bacillus cereus AH18... gi\|206976648, gi... - gi\|206976648\|ref\|ZP_03237553.1\| pyridine nucleotide-disulphide oxidoreductase [Bacillus cereus H3081... gi\|196021608, gi... - gi\|196047574\|ref\|ZP_03114783.1\| pyridine nucleotide-disulphide oxidoreductase [Bacillus cereus 03BB1... gi\|196029696, gi... - gi\|196039536\|ref\|ZP_03106841.1\| pyridine nucleotide-disulphide oxidoreductase [Bacillus cereus NVH05... gi\|195994433, gi... - gi\|196033004\|ref\|ZP_03100417.1\| pyridine nucleotide-disulphide oxidoreductase [Bacillus cereus W], g... gi\|49332650, gi\|... - gi\|49481094\|ref\|YP_039085.1\| pyridine nucleotide-disulphide oxidoreductase [Bacillus thuringiensis s... gi\|118419374, gi... - gi\|118480149\|ref\|YP_897300.1\| pyridine nucleotide-disulphide oxidoreductase [Bacillus thuringiensis ... gi\|225867052, gi... - gi\|225867052\|ref\|YP_002752430.1\| pyridine nucleotide-disulphide oxidoreductase [Bacillus cereus 03BB... gi\|42784256, gi\|... - gi\|42784256\|ref\|NP_981503.1\| pyridine nucleotide-disulphide oxidoreductase [Bacillus cereus ATCC 109... gi\|228689176, gi... - gi\|229094184\|ref\|ZP_04225263.1\| NADH dehydrogenase-like protein yjlD [Bacillus cereus Rock3-42], gi\|... gi\|228936349, gi... - gi\|228936349\|ref\|ZP_04099147.1\| NADH dehydrogenase-like protein yjlD [Bacillus thuringiensis serovar... gi\|228829596, gi... - gi\|228930097\|ref\|ZP_04093107.1\| NADH dehydrogenase-like protein yjlD [Bacillus thuringiensis serovar... gi\|228917702, gi... - gi\|228917702\|ref\|ZP_04081243.1\| NADH dehydrogenase-like protein yjlD [Bacillus thuringiensis serovar...	3.0E-63	[1..392]	[1..392]
gi\|52140463, gi\|... - gi\|52140463\|ref\|YP_086367.1\| pyridine nucleotide-disulphide oxidoreductase [Bacillus cereus E33L], g...	3.0E-63	[1..392]	[1..392]
gi\|228716498, gi... - gi\|229062738\|ref\|ZP_04200043.1\| NADH dehydrogenase-like protein yjlD [Bacillus cereus AH603], gi\|228... gi\|228747033, gi... - gi\|229014256\|ref\|ZP_04171376.1\| NADH dehydrogenase-like protein yjlD [Bacillus mycoides DSM 2048], g... gi\|229169789, gi... - gi\|229169789\|ref\|ZP_04297487.1\| NADH dehydrogenase-like protein yjlD [Bacillus cereus AH621], gi\|228... gi\|228647566, gi... - gi\|229135904\|ref\|ZP_04264668.1\| NADH dehydrogenase-like protein yjlD [Bacillus cereus BDRD-ST196], g... gi\|89156985, gi\|... - gi\|89204971\|ref\|ZP_01183544.1\| NADH dehydrogenase [Bacillus weihenstephanensis KBAB4], gi\|89156985\|g...	5.0E-63	[1..392]	[1..392]
gi\|228722669, gi... - gi\|229049756\|ref\|ZP_04194313.1\| NADH dehydrogenase-like protein yjlD [Bacillus cereus AH676], gi\|228... gi\|228988319, gi... - gi\|228988319\|ref\|ZP_04148413.1\| NADH dehydrogenase-like protein yjlD [Bacillus thuringiensis serovar... gi\|228923798, gi... - gi\|228923798\|ref\|ZP_04087076.1\| NADH dehydrogenase-like protein yjlD [Bacillus thuringiensis serovar... gi\|228624655, gi... - gi\|229158671\|ref\|ZP_04286729.1\| NADH dehydrogenase-like protein yjlD [Bacillus cereus ATCC 4342], gi... gi\|29898658, gi\|... - gi\|30023098\|ref\|NP_834729.1\| NADH dehydrogenase [Bacillus cereus ATCC 14579], gi\|29898658\|gb\|AAP1193... gi\|229147619, gi... - gi\|229147619\|ref\|ZP_04275963.1\| NADH dehydrogenase-like protein yjlD [Bacillus cereus BDRD-ST24], gi... gi\|228653256, gi... - gi\|229130323\|ref\|ZP_04259282.1\| NADH dehydrogenase-like protein yjlD [Bacillus cereus BDRD-Cer4], gi... gi\|228670891, gi... - gi\|229112511\|ref\|ZP_04242048.1\| NADH dehydrogenase-like protein yjlD [Bacillus cereus Rock1-15], gi\|...	6.0E-63	[1..392]	[1..392]
gi\|47567309, gi\|... - gi\|47567309\|ref\|ZP_00238022.1\| NADH dehydrogenase [Bacillus cereus G9241], gi\|47555930\|gb\|EAL14268.1...	3.0E-62	[1..392]	[1..392]
gi\|89200123, gi\|... - gi\|89200123\|ref\|ZP_01178878.1\| FAD-dependent pyridine nucleotide-disulphide oxidoreductase [Bacillus...	9.0E-61	[1..392]	[1..392]
gi\|52003716, gi\|... - gi\|52785885\|ref\|YP_091714.1\| YjlD [Bacillus licheniformis ATCC 14580], gi\|52348387\|gb\|AAU41021.1\| Yj...	2.0E-60	[1..392]	[1..392]
gi\|221322601 - gi\|221322601\|ref\|ZP_03603895.1\| hypothetical protein BsubsS_06777 [Bacillus subtilis subsp. subtilis... YJLD_BACSU - NADH dehydrogenase-like protein yjlD OS=Bacillus subtilis GN=yjlD PE=1 SV=3 gi\|221318328 - gi\|221318328\|ref\|ZP_03599622.1\| hypothetical protein BsubsJ_06671 [Bacillus subtilis subsp. subtilis... gi\|221313405 - gi\|221313405\|ref\|ZP_03595210.1\| hypothetical protein BsubsN3_06732 [Bacillus subtilis subsp. subtili... YJLD_BACSU - NADH dehydrogenase-like protein YjlD OS=Bacillus subtilis (strain 168) GN=yjlD PE=1 SV=3	8.0E-60	[1..392]	[1..392]
gi\|24217097, gi\|... - gi\|24217097\|ref\|NP_714580.1\| NADH dehydrogenase [Leptospira interrogans serovar Lai str. 56601], gi\|...	2.0E-57	[3..391]	[7..396]
gi\|39574484, gi\|... - gi\|42521954\|ref\|NP_967334.1\| NADH dehydrogenase [Bdellovibrio bacteriovorus HD100], gi\|39574484\|emb\|...	3.0E-57	[1..392]	[7..399]

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Predicted Domain #1

Region A:
Residues: [1-392]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKQIVILGA GYGGLLAALN VRKYYSKSEA QVTVINQYPT HQIITELHRL AAGNVSEQAV  60
   61 ARPLTKLFKG KDIDLKIATV ESFSVDSKEI KLAGGTTLSY DALVVALGSK TAYFGIPGLE 120
  121 ENSMVLKSAA DANKIYKHVE DRIREYAKTK NEADATIVIG GGGLTGVELV GELADIMPKL 180
  181 AKSHGVNPKE VKLLLVEAGP KILPVLPDHL IERATTSLEA RGVTFLTGLP VTNVAGNEID 240
  241 LKDGQKLVAN TFVWTGGVQG NPLIGESGLE VNRGRATVDA YLQSTSHKNV FVAGDSAVVF 300
  301 APDGRPYPPT AQIAWQMGEL IGYNLYAALE GKAFEEFAPV NSGTLASLGR KDAVATIGAS 360
  361 NTPLKGLPAS LMKEASNVRY LSHIKGLFSL AY

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	51.0
Match:	1ebdA
Description:	Dihydrolipoamide dehydrogenase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
oxidoreductase activity, acting on NADH or NADPH	3.02819277025365	bayes_pls_golite062009
oxidoreductase activity	2.20962798390442	bayes_pls_golite062009
catalytic activity	1.56773888754354	bayes_pls_golite062009
oxidoreductase activity, acting on sulfur group of donors, NAD or NADP as acceptor	1.09257638684685	bayes_pls_golite062009
hydrogen ion transmembrane transporter activity	0.224438371728402	bayes_pls_golite062009
monovalent inorganic cation transmembrane transporter activity	0.164825358655637	bayes_pls_golite062009
succinate dehydrogenase activity	0.110826254138262	bayes_pls_golite062009
dihydrolipoyl dehydrogenase activity	0.0489118302091532	bayes_pls_golite062009
cation transmembrane transporter activity	0.045538213157577	bayes_pls_golite062009
ion transmembrane transporter activity	8.37249458373712E-4	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: