YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|49181840, gi\|...
Organism:	Bacillus anthracis str. Sterne
Length:	476 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|49181840, gi|....

Description	E-value	Query Range	Subject Range
gi\|42740178, gi\|... - gi\|42784247\|ref\|NP_981494.1\| sodium/alanine symporter family protein [Bacillus cereus ATCC 10987], g...	0.0	[1..476]	[1..476]
gi\|52140470, gi\|... - gi\|52140470\|ref\|YP_086359.1\| sodium/alanine symporter family protein [Bacillus cereus E33L], gi\|5197...	0.0	[1..476]	[1..476]
gi\|29898650, gi\|... - gi\|30023090\|ref\|NP_834721.1\| Sodium/proton-dependent alanine carrier protein [Bacillus cereus ATCC 1...	0.0	[1..476]	[1..480]
gi\|152023303, gi... - gi\|89200413\|ref\|ZP_01179166.1\| Sodium:alanine symporter [Bacillus cereus subsp. cytotoxis NVH 391-98...	0.0	[2..476]	[3..477]
gi\|254686497 - gi\|254686497\|ref\|ZP_05150356.1\| sodium/alanine symporter family protein [Bacillus anthracis str. CNE... gi\|229269138, gi... - gi\|229604730\|ref\|YP_002869297.1\| sodium/alanine symporter family protein [Bacillus anthracis str. A0... gi\|30259777, gi\|... - gi\|30265100\|ref\|NP_847477.1\| sodium/alanine symporter family protein [Bacillus anthracis str. Ames],... gi\|227002772, gi... - gi\|227817832\|ref\|YP_002817841.1\| sodium/alanine symporter family protein [Bacillus anthracis str. CD... gi\|49181839, gi\|... - gi\|49187912\|ref\|YP_031165.1\| sodium/alanine symporter family protein [Bacillus anthracis str. Sterne... gi\|47505757, gi\|... - gi\|47530609\|ref\|YP_021958.1\| sodium/alanine symporter family protein [Bacillus anthracis str. 'Ames ...	0.0	[1..476]	[1..479]
gi\|49331926, gi\|... - gi\|49480370\|ref\|YP_039077.1\| sodium/alanine symporter family protein [Bacillus thuringiensis serovar...	0.0	[1..476]	[1..479]

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Predicted Domain #1

Region A:
Residues: [1-476]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNVLEQFVSS TNTILWSYIL IAMLIGLGLY FSVKLKFVQI THLGEMIRLM SDGLTGKTRK  60
   61 KGSVSSFQAF CMSSAARIGI GNLAGVALAI SMGGPGAVFW MWVIAIIGAS SSFVESTLAQ 120
  121 IYKIKDGSGF RGGPAYYMEK GLNKRWMGIW FSILITVSYG LIFNSVQANT VTLAFENAFG 180
  181 LERYIVGIAL AALVAVIIFG GVKSIARMSE MIVPPMALIY IAVAIFVVIK NFYLIPDVFT 240
  241 EIFKGAFGLD SAVGGGIGAA MKYGIQRGLF ANEAGMGSAP NAAATADVTH PAKQGFIQTI 300
  301 GVLVDTFLVC TSTAFIVLCS GAYKATNLEG IELTQNALSS QIGPWASSFL AIIIFLFAFS 360
  361 SLLGNYYYGE TNIEFIKQSK TWLTIYRIAV VGMVLFGSVA TLQVVWNMAD LFMGLMVITN 420
  421 LIAITLLGRF AYAALADYVR QKKQGKDPVF RADSIPGLTN TECWDKSAVT DKEKAV

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.04
Match:	2a65A
Description:	Crystal structure of LEUTAA, a bacterial homolog of Na+/Cl--dependent neurotransmitter transporters
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits