YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30259777, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	479 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30259777, gi|....

Description	E-value	Query Range	Subject Range
gi\|49331926, gi\|... - gi\|49480370\|ref\|YP_039077.1\| sodium/alanine symporter family protein [Bacillus thuringiensis serovar...	4.0E-82	[1..479]	[1..479]
gi\|52140471, gi\|... - gi\|52140471\|ref\|YP_086358.1\| sodium/alanine symporter family protein [Bacillus cereus E33L], gi\|5197...	4.0E-82	[1..479]	[1..479]
gi\|42784246, gi\|... - gi\|42784246\|ref\|NP_981493.1\| sodium/alanine symporter family protein [Bacillus cereus ATCC 10987], g...	4.0E-81	[1..479]	[1..479]
gi\|29898650, gi\|... - gi\|30023090\|ref\|NP_834721.1\| Sodium/proton-dependent alanine carrier protein [Bacillus cereus ATCC 1...	3.0E-79	[1..479]	[1..480]
gi\|89200126, gi\|... - gi\|89200126\|ref\|ZP_01178881.1\| Sodium:alanine symporter [Bacillus cereus subsp. cytotoxis NVH 391-98...	8.0E-78	[1..477]	[1..477]
gi\|49181840, gi\|... - gi\|49187913\|ref\|YP_031166.1\| sodium/alanine symporter family protein [Bacillus anthracis str. Sterne... gi\|47530610, gi\|... - gi\|47530610\|ref\|YP_021959.1\| sodium/alanine symporter family protein [Bacillus anthracis str. 'Ames ... gi\|229602175, gi... - gi\|229602175\|ref\|YP_002869298.1\| sodium/alanine symporter family protein [Bacillus anthracis str. A0... gi\|30259778, gi\|... - gi\|30265101\|ref\|NP_847478.1\| sodium/alanine symporter family protein [Bacillus anthracis str. Ames],...	6.0E-77	[1..479]	[1..476]
gi\|25300293 - pir\|\|B83989 amino acid carrier protein (sodium/alanine symporter) BH2714 [imported] - Bacillus halod... gi\|10175335, gi\|... - gi\|15615277\|ref\|NP_243580.1\| amino acid carrier protein (sodium/alanine symporter) [Bacillus halodur...	4.0E-74	[4..478]	[2..470]

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Predicted Domain #1

Region A:
Residues: [1-479]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDFLAKVIGD INNVLWSYII IAMLIGLGLY FSFRVKFVQV RYFGEMIRLL GDGASSKTRK  60
   61 AQKEKSGVSS FQAFCMSTAS RVGTGNLAGV AIAISAGGPG AVFWMWLIAV IGGASAFVES 120
  121 TLAQIYKVKD GNTFRGGPAY YMEKGLNKRW LGAIFSVLIT VSFGLIFNAV QSNTVAAAFD 180
  181 GAFKTDSRLV GLVMAGLLAV IIFGGVKRIA RAVEMIVPVM AIIYVAVALF VVVTNITAIP 240
  241 YVFKEIFLHA FGIKEVVGGG LGAAILLGVK RGLFSNEAGM GSAPNAAATA NVTHPVKQGF 300
  301 IQTLGVFTDT LLICSCTAFI ILLSDVHNAA DLNGIQLTQQ ALSQHIGPWA SIFVAVAIFL 360
  361 FAFSSLVGNY YYGETNIEFL NGSKVLLNAY RIAVLGMVML GSVATIQIVW DLADLFMGIM 420
  421 AVINLVAIVF LSKYAFAALS DYVKQKKQGK DPVFYANSIP GLKNTECWEE QVADKEKAV

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.13
Match:	2a65A
Description:	Crystal structure of LEUTAA, a bacterial homolog of Na+/Cl--dependent neurotransmitter transporters
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits