YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30265095, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	192 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30265095, gi|....

Description	E-value	Query Range	Subject Range
gi\|78067070, gi\|... - gi\|78067070\|ref\|YP_369839.1\| hypothetical protein Bcep18194_A5601 [Burkholderia sp. 383], gi\|7796781...	7.0E-59	[1..188]	[1..187]
gi\|152026056, gi... - gi\|89200139\|ref\|ZP_01178894.1\| Conserved hypothetical protein 730 [Bacillus cereus subsp. cytotoxis ...	3.0E-58	[1..192]	[1..192]
gi\|91686542, gi\|... - gi\|91782588\|ref\|YP_557794.1\| hypothetical protein Bxe_A3240 [Burkholderia xenovorans LB400], gi\|9168...	2.0E-57	[1..188]	[1..187]
gi\|72607619, gi\|... - gi\|74019601\|ref\|ZP_00690215.1\| Conserved hypothetical protein 730 [Burkholderia ambifaria AMMD], gi\|...	3.0E-57	[1..188]	[1..187]
gi\|84355238, gi\|... - gi\|84355238\|ref\|ZP_00980126.1\| COG1611: Predicted Rossmann fold nucleotide-binding protein [Burkhold... gi\|67094221, gi\|... - gi\|67658086\|ref\|ZP_00455460.1\| Conserved hypothetical protein 730 [Burkholderia cenocepacia AU 1054]... gi\|67104575, gi\|... - gi\|67661990\|ref\|ZP_00459281.1\| Conserved hypothetical protein 730 [Burkholderia cenocepacia HI2424],...	3.0E-57	[1..188]	[1..187]
gi\|113525822, gi... - gi\|113867046\|ref\|YP_725535.1\| Rossmann fold nucleotide-binding protein / lysine decarboxylase family...	3.0E-57	[1..190]	[1..192]
gi\|88713678, gi\|... - gi\|88713678\|ref\|ZP_01107760.1\| protoporphyrinogen oxidase [Flavobacteriales bacterium HTCC2170], gi\|...	5.0E-57	[1..190]	[289..477]
gi\|87240936 - gi\|87240936\|gb\|ABD32794.1\| Conserved hypothetical protein 730 [Medicago truncatula]	7.0E-57	[2..181]	[14..193]
LOGH_PSEAE - Putative cytokinin riboside 5'-monophosphate phosphoribohydrolase OS=Pseudomonas aeruginosa (strain ... Y4923_PSEAE, YDC... - (P48636) Hypothetical protein PA4923, UPF0717 protein PA4923 OS=Pseudomonas aeruginosa GN=PA4923 PE=...	2.0E-56	[1..190]	[3..191]
gi\|134296458, gi... - gi\|67548328\|ref\|ZP_00426219.1\| Conserved hypothetical protein 730 [Burkholderia vietnamiensis G4], g...	2.0E-56	[1..188]	[1..187]

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Predicted Domain #1

Region A:
Residues: [1-192]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRKICVFAGS NLGERPEFKE QAIALGKMFV ENEYELVYGG SCVGLMGEVA NEVLRLGGRV  60
   61 TGVMPRDLFR GEIVHTGLTE LIEVETMHER KAKMAELADA FIALPGGYGT FEELFEAVCW 120
  121 SQIGIHNKPV GLLNIKDFYG PILQMVERAA EEGFMNPSNK ELIVAAETAD ALIHKIQNYE 180
  181 RPVLGTKWKQ LS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	57.69897
Match:	2a33A
Description:	X-Ray Structure of a Lysine Decarboxylase-Like Protein from Arabidopsis Thaliana Gene AT2G37210
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.459062360506835	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: