YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30259768, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	477 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30259768, gi|....

Description	E-value	Query Range	Subject Range
gi\|42740178, gi\|... - gi\|42784247\|ref\|NP_981494.1\| sodium/alanine symporter family protein [Bacillus cereus ATCC 10987], g...	4.0E-80	[2..477]	[1..476]
gi\|49181840, gi\|... - gi\|49187913\|ref\|YP_031166.1\| sodium/alanine symporter family protein [Bacillus anthracis str. Sterne... gi\|47530610, gi\|... - gi\|47530610\|ref\|YP_021959.1\| sodium/alanine symporter family protein [Bacillus anthracis str. 'Ames ... gi\|229602175, gi... - gi\|229602175\|ref\|YP_002869298.1\| sodium/alanine symporter family protein [Bacillus anthracis str. A0... gi\|30259778, gi\|... - gi\|30265101\|ref\|NP_847478.1\| sodium/alanine symporter family protein [Bacillus anthracis str. Ames],...	8.0E-80	[2..477]	[1..476]
gi\|52140470, gi\|... - gi\|52140470\|ref\|YP_086359.1\| sodium/alanine symporter family protein [Bacillus cereus E33L], gi\|5197...	2.0E-78	[2..477]	[1..476]
gi\|49331926, gi\|... - gi\|49480370\|ref\|YP_039077.1\| sodium/alanine symporter family protein [Bacillus thuringiensis serovar...	2.0E-77	[2..477]	[1..479]
gi\|29898650, gi\|... - gi\|30023090\|ref\|NP_834721.1\| Sodium/proton-dependent alanine carrier protein [Bacillus cereus ATCC 1...	3.0E-77	[2..477]	[1..480]
gi\|152023303, gi... - gi\|89200413\|ref\|ZP_01179166.1\| Sodium:alanine symporter [Bacillus cereus subsp. cytotoxis NVH 391-98...	2.0E-76	[1..477]	[1..477]

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Predicted Domain #1

Region A:
Residues: [1-477]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVDIFSRFLE VTNNILWSYI LIAMLIGFGL YFSFKLKFVQ ITHFGEMVGL ISKGFNRKEK  60
   61 KKDSISPFQA FCLSAAARIG IGNLAGVALA ISMGGPGAVF WMWFIAILGA ATSFVECTLA 120
  121 QIYKVKDGSR FRGGPAYYME KGLNKRWMGV WFSLLITVAY GLIFNSVQAN TVTIAFENAF 180
  181 GLERTIVGAL LALLVAVIIF GGIKSISRIT EMIVPPMAII YIGVAIFVVI NNFTMLPSIF 240
  241 TEIFNSAFGL DQAVAGGIGA AIKFGIQRGL FATEAGMGSS PNAAATSDVS HPVKQGLVQA 300
  301 LGVFVDTFLV CTSTAFIVLC SGLYKGTNLE GIELTQQALS SQIGPWASTF LAIIIFLFAF 360
  361 SSLLGNYYYG ETNIAFIKES KTWLMIYRVA VVGMVFFGSI AALKTVWSLA DLFMGLMVFT 420
  421 NLIAISFLSK FAYAALVDYM KQKKQGKDPV FVASSIPGLQ NTECWDGQDV EENKKAV

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	6.13
Match:	2a65A
Description:	Crystal structure of LEUTAA, a bacterial homolog of Na+/Cl--dependent neurotransmitter transporters
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits