YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30265065, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	260 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30265065, gi|....

Description	E-value	Query Range	Subject Range
gi\|46129072 - gi\|46129072\|ref\|ZP_00201990.1\| COG0706: Preprotein translocase subunit YidC [Haemophilus influenzae ...	2.0E-69	[23..259]	[314..540]
OXAA_HAEIN - Inner membrane protein oxaA OS=Haemophilus influenzae GN=oxaA PE=3 SV=1 YIDC_HAEIN - Membrane protein insertase YidC OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd...	2.0E-69	[23..259]	[314..540]
YIDC_HAEI8 - Membrane protein insertase YidC OS=Haemophilus influenzae (strain 86-028NP) GN=yidC PE=3 SV=1 gi\|229843940, gi... - gi\|229843940\|ref\|ZP_04464081.1\| putative inner membrane protein translocase component YidC [Haemophi...	3.0E-69	[23..259]	[314..540]
gi\|91798521, gi\|... - gi\|92115431\|ref\|YP_575359.1\| putative inner membrane protein translocase component YidC [Chromohalob...	7.0E-69	[24..251]	[346..562]
gi\|46133236 - gi\|46133236\|ref\|ZP_00156859.2\| COG0706: Preprotein translocase subunit YidC [Haemophilus influenzae ... gi\|145638178, gi... - gi\|145638178\|ref\|ZP_01793788.1\| putative inner membrane protein translocase component YidC [Haemophi...	9.0E-69	[23..259]	[314..540]
gi\|229049708, gi... - gi\|229049708\|ref\|ZP_04194265.1\| Membrane protein oxaA 2 [Bacillus cereus AH676], gi\|228722621\|gb\|EEL... YIDC1_BACCR - Membrane protein insertase YidC 1 OS=Bacillus cereus (strain ATCC 14579 / DSM 31 / JCM 2152 / NBRC 1... gi\|228653208, gi... - gi\|229130275\|ref\|ZP_04259234.1\| Membrane protein oxaA 2 [Bacillus cereus BDRD-Cer4], gi\|228653208\|gb... gi\|229112464, gi... - gi\|229112464\|ref\|ZP_04242001.1\| Membrane protein oxaA 2 [Bacillus cereus Rock1-15], gi\|228670844\|gb\|...	1.0E-68	[1..260]	[1..260]
YIDC_MANSM - Membrane protein insertase YidC OS=Mannheimia succiniciproducens (strain MBEL55E) GN=yidC PE=3 SV=1	1.0E-68	[24..259]	[314..539]
gi\|116218725, gi... - gi\|254226943\|ref\|ZP_04920509.1\| inner membrane protein, 60 kDa [Vibrio cholerae V51], gi\|225354408\|r...	2.0E-68	[23..258]	[257..482]
gi\|229347055, gi... - gi\|229515955\|ref\|ZP_04405412.1\| OxaI/YidC membrane insertion protein [Vibrio cholerae TMA 21], gi\|22... tr\|D7HH49\|D7HH49... - Membrane protein insertase YidC OS=Vibrio cholerae MZO-3 GN=yidC PE=3 SV=1, Membrane protein inserta... gi\|254223827, gi... - gi\|75824158\|ref\|ZP_00753622.1\| COG0706: Preprotein translocase subunit YidC [Vibrio cholerae RC385],... gi\|124120800, gi... - gi\|153803663\|ref\|ZP_01958249.1\| inner membrane protein, 60 kDa [Vibrio cholerae MZO-3], gi\|124120800... gi\|75817871 - gi\|75817871\|ref\|ZP_00748135.1\| COG0706: Preprotein translocase subunit YidC [Vibrio cholerae V51] gi\|254291134, gi... - gi\|254291134\|ref\|ZP_04961931.1\| inner membrane protein, 60 kDa [Vibrio cholerae AM-19226], gi\|197751... gi\|153830819, gi... - gi\|153830819\|ref\|ZP_01983486.1\| inner membrane protein, 60 kDa [Vibrio cholerae 623-39], gi\|14887370...	2.0E-68	[23..258]	[316..541]
OXAA_PASMU - Inner membrane protein oxaA OS=Pasteurella multocida GN=oxaA PE=3 SV=1 YIDC_PASMU - Membrane protein insertase YidC OS=Pasteurella multocida (strain Pm70) GN=yidC PE=3 SV=1	4.0E-68	[23..256]	[314..537]

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Predicted Domain #1

Region A:
Residues: [1-260]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLKSYRAVLV SLSLLLVFVL SGCSNATPID AHSTGIWDHY FVYPISFMIQ FVAHHIPGAS  60
   61 FGIAIIIMTL VIRSAMIPLA VSQYRSQAKM KKMQPELQKL KQKYGDVSKD LEKQKQYQKE 120
  121 MSELMKSGGW NPLAGCWPLL IQMPIFSALY YAISRTEEIR TSTFLWVNLG HADPYHILPI 180
  181 IAALTTFIQM KVFQSNSTSG EQVQMLKMQQ IMMPAMILFM GFAAPSGLVL YWITGNLFTM 240
  241 MQTIVLRKIM EREELQLQKA

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	71.29243
Match:	PF02096.11
Description:	No description for PF02096.11 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits