YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30265060, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	627 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30265060, gi|....

Description	E-value	Query Range	Subject Range
gi\|65317006 - gi\|65317006\|ref\|ZP_00389965.1\| COG4932: Predicted outer membrane protein [Bacillus anthracis str. A2... gi\|167529610, gi... - gi\|167634860\|ref\|ZP_02393178.1\| cell wall surface anchor family protein [Bacillus anthracis str. A04... gi\|170670293, gi... - gi\|170685829\|ref\|ZP_02877052.1\| cell wall surface anchor family protein [Bacillus anthracis str. A04... gi\|227817790, gi... - gi\|227817790\|ref\|YP_002817799.1\| cell wall surface anchor family protein [Bacillus anthracis str. CD... gi\|229268921, gi... - gi\|229604513\|ref\|YP_002869257.1\| cell wall surface anchor family protein [Bacillus anthracis str. A0... gi\|172082286, gi... - gi\|177652280\|ref\|ZP_02934783.1\| cell wall surface anchor family protein [Bacillus anthracis str. A01... gi\|190567213, gi... - gi\|190567213\|ref\|ZP_03020128.1\| cell wall surface anchor family protein [Bacillus anthracis Tsiankov...	0.0	[1..627]	[6..632]
gi\|51973986, gi\|... - gi\|52140517\|ref\|YP_086312.1\| cell wall surface anchor family protein [Bacillus cereus E33L], gi\|5197...	2.0E-87	[1..605]	[1..602]
gi\|49478852, gi\|... - gi\|49478852\|ref\|YP_039036.1\| cell wall surface anchor family protein [Bacillus thuringiensis serovar...	2.0E-87	[1..605]	[1..602]
gi\|42784199, gi\|... - gi\|42784199\|ref\|NP_981446.1\| cell wall surface anchor family protein [Bacillus cereus ATCC 10987], g...	2.0E-85	[1..605]	[1..602]
gi\|47556374, gi\|... - gi\|47567056\|ref\|ZP_00237773.1\| collagen adhesion protein [Bacillus cereus G9241], gi\|47556374\|gb\|EAL...	2.0E-75	[25..605]	[2..579]
gi\|30021628, gi\|... - gi\|30021628\|ref\|NP_833259.1\| collagen adhesion protein [Bacillus cereus ATCC 14579], gi\|29897183\|gb\|...	3.0E-68	[1..602]	[1..601]
gi\|163863246, gi... - gi\|89206488\|ref\|ZP_01185046.1\| Surface protein from Gram-positive cocci, anchor region [Bacillus wei...	8.0E-67	[1..602]	[1..601]
gi\|74494194, gi\|... - gi\|75758332\|ref\|ZP_00738456.1\| Collagen adhesion protein [Bacillus thuringiensis serovar israelensis...	1.0E-60	[21..602]	[1..580]
gi\|51476292 - gi\|51476292\|emb\|CAH18136.1\| hypothetical protein [Homo sapiens]	6.0E-54	[77..591]	[1260..1784]

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Predicted Domain #1

Region A:
Residues: [1-83]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKRKMVGKWF SFLSALIILL GIAMPQVKAE VMNRETYKMD WSYSNSKQRE IKTEIIKTAS  60
   61 GSIAYCLTPD LRSPNGEDLP EMG

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [84-460]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KTSDAVYRVL LNGYPQKGPS ELGVATTEEA HYATQLAVWI AANELTEEDL VAKNERVHNL  60
   61 MKRLVEASKK ETGSQDVFFK VNPVDSQTAT QNGDYLETGF YAVQTNAVSG SYTILPENAP 120
  121 KGLRIVNENG EEKSTLSINE KFKILLPKDT SSGNFKMKVK STLTNLQAIA FKGSEKVQNT 180
  181 TVLLQRNSEK ISTDLVVNWE SVGSLKIMKL GEKKEVLKGA VFEVSNENFK QNVTTSDKGI 240
  241 AELGNLPIGI YSVKEIQAPA GYVLDRSVKK IEVKTGETAV LELKNENVKG ELEITKVDVA 300
  301 DGNTKLPNAE FTIYNEQGKE VVKGKTDEKG VAKFKLPYGK YTYKETIAPN GYVINEETFA 360
  361 FEIKENGEII KHIVQDK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	24.69897
Match:	1fnfA
Description:	FRAGMENT OF HUMAN FIBRONECTIN ENCOMPASSING TYPE-III REPEATS 7 THROUGH 10
Matching Structure (courtesy of the PDB):

Predicted Domain #3

Region A:
Residues: [461-627]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KVEGELEITK VDVADGNTKL PNAEFTIYNE QGKEVVKGKT NEQGIAKFKL PYGKYTYKET  60
   61 IAPNGYVINE EKFGFEIKEN GEIIKHIVKN KKEEKASFPS KPNKPTPNGE VKPSADVKPM 120
  121 QQPSTHNEVR LPATGGVSNQ FTSLFVLGIS FIIAGAYVLR MKNRKEM

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	8.69897
Match:	2pz4A
Description:	No description for 2pz4A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits