YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30265051, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	793 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30265051, gi|....

Description	E-value	Query Range	Subject Range
gi\|89200166, gi\|... - gi\|89200166\|ref\|ZP_01178921.1\| Enoyl-CoA hydratase/isomerase:3-hydroxyacyl-CoA dehydrogenase, C-term...	0.0	[1..793]	[1..793]
gi\|47567046, gi\|... - gi\|47567046\|ref\|ZP_00237763.1\| putative 3-hydroxyacyl-CoA dehydrogenase FadB [Bacillus cereus G9241]...	0.0	[1..793]	[1..793]
gi\|30023044, gi\|... - gi\|30023044\|ref\|NP_834675.1\| enoyl-CoA hydratase [Bacillus cereus ATCC 14579], gi\|29898604\|gb\|AAP118... gi\|229130263, gi... - gi\|229130263\|ref\|ZP_04259222.1\| 3-hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase/isomerase [Bacil... gi\|229112450, gi... - gi\|229112450\|ref\|ZP_04241988.1\| 3-hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase/isomerase [Bacil... gi\|228722609, gi... - gi\|229049696\|ref\|ZP_04194253.1\| 3-hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase/isomerase [Bacil...	0.0	[1..793]	[1..793]
gi\|163942727, gi... - gi\|89206899\|ref\|ZP_01185450.1\| Enoyl-CoA hydratase/isomerase:3-hydroxyacyl-CoA dehydrogenase, C-term...	0.0	[1..793]	[1..793]
gi\|51973993, gi\|... - gi\|52140524\|ref\|YP_086305.1\| 3-hydroxyacyl-CoA dehydrogenase and enoyl-CoA hydratase/carnithine race...	0.0	[1..793]	[1..793]
gi\|49479427, gi\|... - gi\|49479427\|ref\|YP_039029.1\| 3-hydroxyacyl-CoA dehydrogenase and enoyl-CoA hydratase/carnithine race...	0.0	[1..793]	[1..793]
gi\|42784190, gi\|... - gi\|42784190\|ref\|NP_981437.1\| 3-hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase/isomerase family pr...	0.0	[1..793]	[1..793]
gi\|89084632, gi\|... - gi\|89100686\|ref\|ZP_01173543.1\| 3-hydroxyacyl-CoA dehydrogenase and enoyl-CoA hydratase/carnithine ra...	0.0	[3..793]	[4..794]
gi\|56381385, gi\|... - gi\|56421543\|ref\|YP_148861.1\| 3-hydroxyacyl-CoA dehydrogenase [Geobacillus kaustophilus HTA426], gi\|5...	0.0	[4..793]	[5..795]
gi\|7450197 - pir\|\|E69285 3-hydroxyacyl-CoA dehydrogenase (hbd-2) homolog - Archaeoglobus fulgidus gi\|2650351, gi\|1... - gi\|2650351\|gb\|AAB90948.1\| 3-hydroxyacyl-CoA dehydrogenase (hbd-2) [Archaeoglobus fulgidus DSM 4304],...	0.0	[3..731]	[2..655]

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Predicted Domain #1

Region A:
Residues: [1-443]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFQIKKAAVL GSGVMGSGIA AHLANIGIPT LLLDIVPPAL TKEEEAKGLT LEHKSVRNRF  60
   61 SNTAVQKLLK QKPAPLTVKG NLALIEAGNL EDDLERLADV DWIIEVVVEN LDIKKKLFEK 120
  121 VDAVRKPGSI VSSNTSGISV EKMAEGRSDD FQKHFLGTHF FNPPRYLKLL EVIPTKKTDP 180
  181 QVLSFMKLFG EDVLGKGVVI AKDTPNFIGN RIGTYGLLVT LQEMVKRGYS IGEVDSVTGP 240
  241 LIGRPKSATF RTLDVVGLDT FVYVANNVYE NVQEKERDVF KVPAFMHDML DKKWLGSKTG 300
  301 QGFFLKQGKE ILELNPETME YEARKKLKAA SIELSKQEKG LSNKLKALVY AKDRAGELLW 360
  361 NIITPTLLYS AKLHKEIADD IVAIDQAMKW GFGWEQGPFE VWDAIGVEKS VQKMEESGAV 420
  421 IPAWVKEMLE KGFTTFYKHD NGD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	96.154902
Match:	1zcjA
Description:	Crystal structure of 3-hydroxyacyl-CoA dehydrogenase
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [444-793]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SYYYDNGEYK LIECNKKAIS LKQLKAKNGV LKKNSGASLI DLGDGILCLE FHSKSNAIGM  60
   61 DITQMINYAV DEVEKNYKGL VIGNQSKNFC VGANLAMILM EAQDDNYFEI EWVVKNFQDA 120
  121 MMKIKYSSKP VVAAPYGMTL GGGTEVCLPA ASIQASSETY MGLVEVGVGL IPGGGGNKEL 180
  181 YIKHLNKMAN GVEFDLQKVA NKVFETVAMA KVLTSGQEAV SHNFLGDKDG ISVNGDHLLY 240
  241 DAKQKALALY EAGYKAPIRK KIPVVGETGY ATLALGAEAM HLSGYISEYD LHIAKKLAYV 300
  301 IAGGKVPYGT EVDEQYLLDV EREAFISLVS EMKSQARMQH MLVKGKPLRN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	58.39794
Match:	2hw5A
Description:	No description for 2hw5A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits