YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30259674, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	193 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30259674, gi|....

Description	E-value	Query Range	Subject Range
gi\|15893316, gi\|... - gi\|15893316\|ref\|NP_346665.1\| NADPH-quinone reductase YabF family [Clostridium acetobutylicum ATCC 82... gi\|25496584 - pir\|\|B96902 probable NADPH-quinone reductase, YabF family [imported] - Clostridium acetobutylicum	9.0E-39	[1..192]	[1..192]
gi\|65316948 - gi\|65316948\|ref\|ZP_00389907.1\| COG2249: Putative NADPH-quinone reductase (modulator of drug activity...	6.0E-37	[1..193]	[26..218]
gi\|42784141, gi\|... - gi\|42784141\|ref\|NP_981388.1\| quinone family NAD(P)H dehydrogenase [Bacillus cereus ATCC 10987], gi\|4...	6.0E-37	[1..193]	[1..193]
gi\|52140575, gi\|... - gi\|52140575\|ref\|YP_086255.1\| NAD(P)H dehydrogenase (quinone) [Bacillus cereus E33L], gi\|51974044\|gb\|...	1.0E-36	[1..193]	[1..193]
gi\|47566993, gi\|... - gi\|47566993\|ref\|ZP_00237710.1\| NAD(P)H dehydrogenase [Bacillus cereus G9241], gi\|47556311\|gb\|EAL1464...	2.0E-36	[1..193]	[1..193]
gi\|75758900, gi\|... - gi\|75758900\|ref\|ZP_00739011.1\| NAD(P)H dehydrogenase (quinone) [Bacillus thuringiensis serovar israe...	3.0E-36	[1..193]	[1..193]
gi\|29898558, gi\|... - gi\|30022998\|ref\|NP_834629.1\| NAD(P)H dehydrogenase [quinone] [Bacillus cereus ATCC 14579], gi\|298985... gi\|218232315, gi... - gi\|218232315\|ref\|YP_002369761.1\| NAD(P)H dehydrogenase, quinone family [Bacillus cereus B4264], gi\|2... gi\|228961205, gi... - gi\|228961205\|ref\|ZP_04122826.1\| NADPH dehydrogenase, quinone [Bacillus thuringiensis serovar pakista... gi\|228630249, gi... - gi\|229153150\|ref\|ZP_04281329.1\| NADPH dehydrogenase, quinone [Bacillus cereus m1550], gi\|228630249\|g... gi\|228653151, gi... - gi\|229130218\|ref\|ZP_04259177.1\| NADPH dehydrogenase, quinone [Bacillus cereus BDRD-Cer4], gi\|2286531... gi\|229112404, gi... - gi\|229112404\|ref\|ZP_04241942.1\| NADPH dehydrogenase, quinone [Bacillus cereus Rock1-15], gi\|22867105...	4.0E-36	[1..193]	[1..193]
gi\|89155970, gi\|... - gi\|89206068\|ref\|ZP_01184631.1\| NAD(P)H dehydrogenase (quinone) [Bacillus weihenstephanensis KBAB4], ...	6.0E-36	[1..193]	[1..193]
gi\|86747949, gi\|... - gi\|86747949\|ref\|YP_484445.1\| NAD(P)H dehydrogenase (quinone) [Rhodopseudomonas palustris HaA2], gi\|8...	7.0E-36	[1..192]	[1..219]
gi\|152988162, gi... - gi\|94417587\|ref\|ZP_01297405.1\| hypothetical protein PaerP_01000904 [Pseudomonas aeruginosa PA7], gi\|...	1.0E-35	[1..192]	[1..211]

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Predicted Domain #1

Region A:
Residues: [1-193]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKHVIVYAHP NTESFNHAIL ETVKSELEEK GHEVRVRDLY ELNFNPVLGA SNFISFSQGN  60
   61 TPADIKEEQE HISWADTITF IYPVWWAGLP AILKGYVDRV FSHGFAYAYG ENGIEKLLSG 120
  121 KKGLLLSTMG NTKEAYTAGG MFDAMKKTAD VGIFEFTGIE TIEHTFYTSV PSVDDSVRKQ 180
  181 YLEEVKDVVN RAF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	35.045757
Match:	1qrdA
Description:	NAD(P)H:quinone reductase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.646071595570549	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: