YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|49181653, gi\|...
Organism:	Bacillus anthracis str. Sterne
Length:	441 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|49181653, gi|....

Description	E-value	Query Range	Subject Range
gi\|48785121, gi\|... - gi\|91785188\|ref\|YP_560394.1\| Na+/gluconate symporter, GntP [Burkholderia xenovorans LB400], gi\|91689...	2.0E-64	[4..441]	[8..465]
gi\|170731982, gi... - gi\|170731982\|ref\|YP_001763929.1\| gluconate transporter [Burkholderia cenocepacia MC0-3], gi\|16981522... gi\|116646774, gi... - gi\|67666947\|ref\|ZP_00464183.1\| Gluconate transporter [Burkholderia cenocepacia HI2424], gi\|67099473\|... gi\|67092001, gi\|... - gi\|67660372\|ref\|ZP_00457720.1\| Gluconate transporter [Burkholderia cenocepacia AU 1054], gi\|67092001...	2.0E-64	[4..441]	[8..453]
gi\|78065224, gi\|... - gi\|78065224\|ref\|YP_367993.1\| gluconate transporter [Burkholderia sp. 383], gi\|77965969\|gb\|ABB07349.1...	1.0E-63	[4..441]	[8..453]
gi\|124871105, gi... - gi\|84356706\|ref\|ZP_00981542.1\| COG2610: H+/gluconate symporter and related permeases [Burkholderia c...	2.0E-63	[4..441]	[8..453]
gi\|72121188, gi\|... - gi\|73537851\|ref\|YP_298218.1\| gluconate transporter [Ralstonia eutropha JMP134], gi\|72121188\|gb\|AAZ63...	2.0E-63	[3..427]	[7..439]
gi\|104781532, gi... - gi\|95110519\|emb\|CAK15227.1\| putative gluconate permease (GntP family) [Pseudomonas entomophila L48],... gi\|95110519 - gi\|95110519\|emb\|CAK15227.1\| putative gluconate permease (GntP family) [Pseudomonas entomophila L48]	5.0E-63	[2..441]	[7..450]
gi\|83653210, gi\|... - gi\|83719385\|ref\|YP_441766.1\| gluconate permease, putative [Burkholderia thailandensis E264], gi\|8365...	6.0E-63	[4..441]	[8..453]
gi\|115280599, gi... - gi\|74019709\|ref\|ZP_00690322.1\| Gluconate transporter [Burkholderia ambifaria AMMD], gi\|72607521\|gb\|E... gi\|118641437, gi... - gi\|172059644\|ref\|YP_001807296.1\| gluconate transporter [Burkholderia ambifaria MC40-6], gi\|171992161...	7.0E-63	[4..441]	[8..453]
gi\|70734270, gi\|... - gi\|70734270\|ref\|YP_257910.1\| gluconate transporter family protein [Pseudomonas fluorescens Pf-5], gi...	1.0E-62	[4..441]	[8..449]
gi\|26990130, gi\|... - gi\|26990130\|ref\|NP_745555.1\| gluconate transporter [Pseudomonas putida KT2440], gi\|24985064\|gb\|AAN69...	2.0E-62	[2..441]	[7..450]

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Predicted Domain #1

Region A:
Residues: [1-208]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDIYLLIVTL LAIAIVILGV SWWKWHAFIS LTVASLFLAI MSGLNLTKIV TAYESGVGSV  60
   61 LGHLVGILAL GTILGKMMSD SGAGMQVADF FIRFFGVKKL PWAMLFAGFV IGIPVFFEVG 120
  121 IVILLPLVIS IRKTTKQNIL LIALPVIAGL SIVHGLVPPH PGAMTAIGIY NANLGKVLLY 180
  181 SLLIALPTAI IAGPIFAKWV HKRVIPEN

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [209-329]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EPELIRVTTV STDLPSRKVS FFIILLPVVL MILSVVAPYI SLPKKMTEFF VFIGSPVIAL  60
   61 LISCFAAFYL LGMRQGINKK MIKKLTDESL LPVGSIILII GAGGGFKQIL IESGVGTAIA 120
  121 Q

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [330-441]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEHISLSPI VLAFMVAGLI RIATGSATVA LTTAAGIVSP VIQHMSGVNL ELLVIATGAG  60
   61 SLMFSHVNDA GFWLVKEYLG LTVKETFKTW TVLETLLSFI AFGFALVLNM FL

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits