YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30264880, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	222 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30264880, gi|....

Description	E-value	Query Range	Subject Range
gi\|51974161, gi\|... - gi\|52140692\|ref\|YP_086137.1\| thiamine transporter [Bacillus cereus E33L], gi\|51974161\|gb\|AAU15711.1\|...	3.0E-75	[1..222]	[1..222]
gi\|42784013, gi\|... - gi\|42784013\|ref\|NP_981260.1\| hypothetical protein BCE_4967 [Bacillus cereus ATCC 10987], gi\|42739943...	3.0E-74	[1..222]	[1..222]
gi\|49332927, gi\|... - gi\|49481371\|ref\|YP_038856.1\| thiamine transporter [Bacillus thuringiensis serovar konkukian str. 97-...	5.0E-74	[1..222]	[1..222]
gi\|47555289, gi\|... - gi\|47567986\|ref\|ZP_00238692.1\| membrane protein, putative [Bacillus cereus G9241], gi\|47555289\|gb\|EA...	1.0E-73	[1..222]	[1..222]
gi\|29898436, gi\|... - gi\|30022877\|ref\|NP_834508.1\| thiamine transporter [Bacillus cereus ATCC 14579], gi\|29898436\|gb\|AAP11...	4.0E-73	[1..222]	[1..222]
gi\|74493624, gi\|... - gi\|75758858\|ref\|ZP_00738970.1\| Thiamine transporter [Bacillus thuringiensis serovar israelensis ATCC...	3.0E-70	[1..222]	[11..233]
gi\|89204303, gi\|... - gi\|89204303\|ref\|ZP_01182881.1\| Thiamine transporter YuaJ [Bacillus weihenstephanensis KBAB4], gi\|891...	1.0E-56	[1..222]	[1..200]
gi\|152025916, gi... - gi\|89201862\|ref\|ZP_01180596.1\| Thiamine transporter YuaJ [Bacillus cereus subsp. cytotoxis NVH 391-9...	1.0E-54	[1..222]	[1..200]
gi\|254873604 - gi\|254873604\|ref\|ZP_05246314.1\| probable proton-coupled thiamine transporter YuaJ [Listeria monocyto... gi\|16413941, gi\|... - pir\|\|AC1616 hypothetical protein homolog lin1468 [imported] - Listeria innocua (strain Clip11262), g... gi\|217964423, gi... - gi\|217964423\|ref\|YP_002350101.1\| probable proton-coupled thiamine transporter YuaJ [Listeria monocyt... gi\|16800536 - gi\|16800536\|ref\|NP_470804.1\| hypothetical protein lin1468 [Listeria innocua Clip11262]	6.0E-47	[1..207]	[1..183]
gi\|224501630 - gi\|224501630\|ref\|ZP_03669937.1\| hypothetical protein LmonFR_03777 [Listeria monocytogenes FSL R2-561... gi\|255027246 - gi\|255027246\|ref\|ZP_05299232.1\| hypothetical protein LmonocytFSL_14548 [Listeria monocytogenes FSL J... gi\|16803469 - gi\|16803469\|ref\|NP_464954.1\| hypothetical protein lmo1429 [Listeria monocytogenes EGD-e] gi\|25365375, gi\|... - pir\|\|AE1253 hypothetical protein lmo1429 [imported] - Listeria monocytogenes (strain EGD-e), gi\|1641... gi\|153183787, gi... - gi\|254898405\|ref\|ZP_05258329.1\| hypothetical protein LmonJ_01280 [Listeria monocytogenes J0161], gi\|... gi\|153190821, gi... - gi\|254912104\|ref\|ZP_05262116.1\| hypothetical protein LmonJ2_04850 [Listeria monocytogenes J2818], gi... gi\|127634490, gi... - gi\|254829812\|ref\|ZP_05234467.1\| hypothetical protein Lmon1_00585 [Listeria monocytogenes 10403S], gi... gi\|254936431, gi... - gi\|254936431\|ref\|ZP_05268128.1\| hypothetical protein LmonF6_04840 [Listeria monocytogenes F6900], gi... gi\|133730161, gi... - gi\|254827717\|ref\|ZP_05232404.1\| hypothetical protein LmonocytogeFSL_04595 [Listeria monocytogenes FS...	1.0E-45	[1..207]	[1..183]

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Predicted Domain #1

Region A:
Residues: [1-222]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRNTNLQAMI ESAILAAFAM VIDILPLSIK LPTGGSISFA MIPIFIIAYR WGFKSAFLGG  60
   61 LVWGLLQIVV GDAYILTPVQ AFIEYFIAFA FIGFAGLFYR PIQKALLTSN ENNLEQSNLD 120
  121 SRKDKASSKQ NEGKKVLGYI ILATFIGSFA RYFCHFIAGI IFWGQYAPKG QSAVLYSLIV 180
  181 NGSTMIGSYI LCTVLLIFLF LTSPRLFKSI NAYQINANKK GA

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	101.408935
Match:	PF09515.1
Description:	No description for PF09515.1 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits