YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|49187684, gi\|...
Organism:	Bacillus anthracis str. Sterne
Length:	268 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|49187684, gi|....

Description	E-value	Query Range	Subject Range
gi\|47558020, gi\|... - gi\|47565234\|ref\|ZP_00236277.1\| S-layer homology domain [Bacillus cereus G9241], gi\|47558020\|gb\|EAL16...	6.0E-70	[1..268]	[1..266]
gi\|42783998, gi\|... - gi\|42783998\|ref\|NP_981245.1\| S-layer protein, putative [Bacillus cereus ATCC 10987], gi\|42739928\|gb\|...	8.0E-70	[1..268]	[1..272]
gi\|51974174, gi\|... - gi\|52140705\|ref\|YP_086125.1\| S-layer protein [Bacillus cereus E33L], gi\|51974174\|gb\|AAU15724.1\| S-la...	4.0E-67	[1..268]	[1..276]
gi\|89157866, gi\|... - gi\|89204293\|ref\|ZP_01182871.1\| S-layer-like region:Excalibur [Bacillus weihenstephanensis KBAB4], gi...	3.0E-66	[1..268]	[1..266]
gi\|49330321, gi\|... - gi\|49478765\|ref\|YP_038845.1\| S-layer protein [Bacillus thuringiensis serovar konkukian str. 97-27], ...	8.0E-63	[1..268]	[1..257]
gi\|89201852, gi\|... - gi\|89201852\|ref\|ZP_01180586.1\| Excalibur [Bacillus cereus subsp. cytotoxis NVH 391-98], gi\|89150101\|...	5.0E-62	[1..268]	[10..272]
gi\|254737343 - gi\|254737343\|ref\|ZP_05195047.1\| putative S-layer protein [Bacillus anthracis str. Western North Amer... gi\|254722304 - gi\|254722304\|ref\|ZP_05184092.1\| putative S-layer protein [Bacillus anthracis str. A1055] gi\|254684896 - gi\|254684896\|ref\|ZP_05148756.1\| putative S-layer protein [Bacillus anthracis str. CNEVA-9066] gi\|229121870, gi... - gi\|229121870\|ref\|ZP_04251089.1\| hypothetical protein bcere0016_21690 [Bacillus cereus 95/8201], gi\|2... gi\|254760178 - gi\|254760178\|ref\|ZP_05212202.1\| putative S-layer protein [Bacillus anthracis str. Australia 94] gi\|254751659 - gi\|254751659\|ref\|ZP_05203696.1\| putative S-layer protein [Bacillus anthracis str. Vollum] gi\|254743472 - gi\|254743472\|ref\|ZP_05201157.1\| putative S-layer protein [Bacillus anthracis str. Kruger B] gi\|47502762, gi\|... - gi\|47527614\|ref\|YP_018963.1\| S-layer protein, putative [Bacillus anthracis str. 'Ames Ancestor'], gi... gi\|30256954, gi\|... - gi\|30262323\|ref\|NP_844700.1\| S-layer protein, putative [Bacillus anthracis str. Ames], gi\|30256954\|g... gi\|227003296, gi... - gi\|227814868\|ref\|YP_002814877.1\| putative S-layer protein [Bacillus anthracis str. CDC 684], gi\|2270... gi\|218903456, gi... - gi\|218903456\|ref\|YP_002451290.1\| putative S-layer protein [Bacillus cereus AH820], gi\|218540044\|gb\|A... gi\|49185169, gi\|... - gi\|49185169\|ref\|YP_028421.1\| S-layer protein, putative [Bacillus anthracis str. Sterne], gi\|49179096...	2.0E-58	[1..258]	[1..256]

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Predicted Domain #1

Region A:
Residues: [1-157]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGLKKLIVTG AIVATTAFTS IGTAQASAGF KDVPNNHWSY KAIMDLANKN VVAGYGNGLF  60
   61 GFGDDVTREQ VAALMFRHLK PTVKEQYNNP YKDITDRSTM FKKEILALTE MGVFVGDNTG 120
  121 KFRPKDSLTR EEMAQILTRG FQLQIRGDHN FPDVDRN

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.447	N/A	N/A	d.58.48	MTH1187-like
View	Download	0.275	N/A	N/A	a.80.1	DNA polymerase III clamp loader subunits, C-terminal domain
View	Download	0.233	N/A	N/A	d.58.47	Hypothetical protein VC0424
View	Download	0.212	N/A	N/A	d.58.49	YajQ-like

Predicted Domain #2

Region A:
Residues: [158-268]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GWANPAITAI KSNYITAGTG DGKFAPKMHV SREQYVQFLY NATLPFEERP GAKQPQPQPK  60
   61 PEVKPDPKRF ANCKEANDAG YYDITRDSPY YGKHLDRDGD GIACEKKKKG K

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.380	N/A	N/A	d.112.1	Phoshotransferase/anion transport protein
View	Download	0.355	N/A	N/A	d.2.1	Lysozyme-like
View	Download	0.230	N/A	N/A	a.45.1	Glutathione S-transferase (GST), C-terminal domain
View	Download	0.216	N/A	N/A	a.40.1	Calponin-homology domain, CH-domain
View	Download	0.212	N/A	N/A	d.14.1	Ribosomal protein S5 domain 2-like

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits