YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30259539, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	449 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30259539, gi|....

Description	E-value	Query Range	Subject Range
gi\|238718325, gi... - gi\|77963691\|ref\|ZP_00827499.1\| COG1271: Cytochrome bd-type quinol oxidase, subunit 1 [Yersinia molla...	0.0	[2..445]	[4..449]
gi\|238783236, gi... - gi\|77959410\|ref\|ZP_00823430.1\| COG1271: Cytochrome bd-type quinol oxidase, subunit 1 [Yersinia berco...	0.0	[2..445]	[4..449]
gi\|218889789, gi... - gi\|218889789\|ref\|YP_002438653.1\| cyanide insensitive terminal oxidase [Pseudomonas aeruginosa LESB58... gi\|126168754, gi... - gi\|84319291\|ref\|ZP_00967690.1\| COG1271: Cytochrome bd-type quinol oxidase, subunit 1 [Pseudomonas ae... gi\|126195997, gi... - gi\|84325317\|ref\|ZP_00973355.1\| COG1271: Cytochrome bd-type quinol oxidase, subunit 1 [Pseudomonas ae... gi\|11280225, gi\|... - gi\|2208964\|emb\|CAA71555.1\| cyanide insensitive terminal oxidase [Pseudomonas aeruginosa], pir\|\|T4727... gi\|107103447 - gi\|107103447\|ref\|ZP_01367365.1\| hypothetical protein PaerPA_01004517 [Pseudomonas aeruginosa PACS2] gi\|15599125, gi\|... - gi\|9950115\|gb\|AAG07317.1\|AE004810_9 cyanide insensitive terminal oxidase [Pseudomonas aeruginosa PAO...	0.0	[2..446]	[4..452]
gi\|238728155, gi... - gi\|77979804\|ref\|ZP_00835220.1\| COG1271: Cytochrome bd-type quinol oxidase, subunit 1 [Yersinia inter...	0.0	[2..445]	[4..449]
gi\|116051970, gi... - gi\|46164570\|ref\|ZP_00137368.2\| COG1271: Cytochrome bd-type quinol oxidase, subunit 1 [Pseudomonas ae...	0.0	[2..446]	[4..452]
gi\|150962478, gi... - gi\|94412736\|ref\|ZP_01292641.1\| hypothetical protein PaerP_01005475 [Pseudomonas aeruginosa PA7], gi\|...	0.0	[2..446]	[4..452]
tr\|I7B5T1\|I7B5T1... - Ubiquinol oxidase subunit I, cyanide insensitive OS=Pseudomonas putida (strain DOT-T1E) GN=cydA PE=4... gi\|26991335, gi\|... - gi\|26991335\|ref\|NP_746760.1\| ubiquinol oxidase subunit I, cyanide insensitive [Pseudomonas putida KT... gi\|82714854, gi\|... - gi\|82738077\|ref\|ZP_00900917.1\| ubiquinol oxidase subunit I, cyanide insensitive [Pseudomonas putida ...	0.0	[2..445]	[4..449]
gi\|77459608, gi\|... - gi\|77459608\|ref\|YP_349115.1\| cytochrome bd ubiquinol oxidase, subunit I [Pseudomonas fluorescens Pf0...	0.0	[2..443]	[4..447]
gi\|95112707 - gi\|95112707\|emb\|CAK17435.1\| ubiquinol oxidase subunit I, cyanide insensitive [Pseudomonas entomophil... gi\|104783720, gi... - gi\|95112707\|emb\|CAK17435.1\| ubiquinol oxidase subunit I, cyanide insensitive [Pseudomonas entomophil...	0.0	[2..445]	[4..449]
gi\|67542193, gi\|... - gi\|67542193\|ref\|ZP_00420130.1\| Cytochrome bd ubiquinol oxidase, subunit I [Burkholderia vietnamiensi...	0.0	[2..449]	[109..557]

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Predicted Domain #1

Region A:
Residues: [1-144]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDVLLLSRF QFAITIFYHF LFVPLTIGLV ILVACMETQY ARTLNPTYRK MANFWGKLFT  60
   61 INFVMGIITG ITMEFQFGTN WSEYSKYMGD IFGSPLAIEA LVAFFLESTF MGIWLFGKDK 120
  121 ISPKFRAFCM WMVALGTNIS ALWI

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [145-258]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ITANGFMQNP VGYVVRNGRA ELNDFWALVT NPYAWNMFFH TVIGCYIVGA FFVMAISAYH  60
   61 LLRKNEVEFF KKSFKFGLML GLFAATITPF IGHQSGVSAA KYQPAKGAAM EAVW

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [259-379]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ETGKGQGFSI VQIPDVKNEK NFEFLTIPKL GSFFYTNSFD GEIVGLKDIP KEDRPNVNLV  60
   61 YYSFRLMVAL GMFFMALTWY GFYLNRKGKL ENSKRYLKIT IWSVLLPYIA INAGWIVAEV 120
  121 G

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [380-449]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RQPWTVYKLM RTAESVSPIS VPQIWFSLIS LILFYTLLLI ADVYLMLKFA KKGPAALEEP  60
   61 ATKGGVAHVS

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits