YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|47530285, gi\|...
Organism:	Bacillus anthracis str. 'Ames Ancestor'
Length:	359 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|47530285, gi|....

Description	E-value	Query Range	Subject Range
gi\|47557946, gi\|... - gi\|47565160\|ref\|ZP_00236203.1\| spore germination protein IC [Bacillus cereus G9241], gi\|47557946\|gb\|...	2.0E-97	[1..359]	[1..359]
gi\|3290177 - gi\|3290177\|gb\|AAD03543.1\| spore germination protein GerIC [Bacillus cereus] gi\|3290177\|gb\|AA... - spore germination protein GerIC [Bacillus cereus]	6.0E-97	[1..359]	[1..359]
gi\|49481593, gi\|... - gi\|49481593\|ref\|YP_038780.1\| spore germination protein [Bacillus thuringiensis serovar konkukian str...	3.0E-95	[1..359]	[1..361]
gi\|30022806, gi\|... - gi\|30022806\|ref\|NP_834437.1\| spore germination protein IC [Bacillus cereus ATCC 14579], gi\|29898365\|...	3.0E-95	[1..359]	[1..361]
gi\|42739852, gi\|... - gi\|42783922\|ref\|NP_981169.1\| spore germination protein GerHC [Bacillus cereus ATCC 10987], gi\|427398...	5.0E-95	[1..359]	[1..361]
gi\|51974237, gi\|... - gi\|52140768\|ref\|YP_086061.1\| spore germination protein [Bacillus cereus E33L], gi\|51974237\|gb\|AAU157...	4.0E-94	[1..359]	[1..361]
gi\|74490368, gi\|... - gi\|75762146\|ref\|ZP_00742046.1\| Spore germination protein IC [Bacillus thuringiensis serovar israelen...	3.0E-93	[1..359]	[6..364]
gi\|89897223, gi\|... - gi\|89897223\|ref\|YP_520710.1\| hypothetical protein DSY4477 [Desulfitobacterium hafniense Y51], gi\|893... gi\|68168096, gi\|... - gi\|68208002\|ref\|ZP_00560141.1\| Spore germination B3 GerAC like, C-terminal [Desulfitobacterium hafni...	1.0E-92	[1..358]	[1..380]
gi\|163864662, gi... - gi\|89204229\|ref\|ZP_01182807.1\| Spore germination B3 GerAC like, C-terminal [Bacillus weihenstephanen...	3.0E-91	[1..359]	[1..359]
gi\|89201267, gi\|... - gi\|89201267\|ref\|ZP_01180012.1\| Spore germination B3 GerAC like, C-terminal [Bacillus cereus subsp. c...	1.0E-88	[1..359]	[1..359]

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Predicted Domain #1

Region A:
Residues: [1-69]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKIKSKLIL ISCIALFSLT GCLQKNIIDD VQLIQGTVFD TAKDNKVKVT FVCPIQKKGN  60
   61 KVQVFEGTA

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [70-180]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NAVKQVKADT SLESSQPFAS GQMRVALYTI RLAKKGMSTS FDTLLRDVNI GNALYAALLD  60
   61 GNGTELLKGK YSTSYNVAIY IKKLLEHNME TGPLPADNLH IGAFRYYQEG Q

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [181-359]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DYYIPILKKH GDKIKITGIG LFKKDKYIGK IAEKDMFIFK GLLEKHKLDS HEFKTDSAYV  60
   61 MINNIRSVPT YDIKIKNGKP SFFIHVRLDA RIQELSKQIN LENNKNTKNI EKDVQKQLDK 120
  121 QAAKLIKHLK SLGVDPLGLG AKYKQHYRPF KLEEWRQLYK DVPVTIKYTV NITNSGVIE

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	48.036212
Match:	PF05504.2
Description:	No description for PF05504.2 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits