YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30264802, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	364 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30264802, gi|....

Description	E-value	Query Range	Subject Range
gi\|68373624 - gi\|68373624\|ref\|XP_692242.1\| PREDICTED: similar to Cationic amino acid transporter 3 (CAT-3) (Solute...	9.0E-64	[3..354]	[970..1376]
gi\|91084137 - gi\|91084137\|ref\|XP_969912.1\| PREDICTED: similar to CG8475-PA, isoform A [Tribolium castaneum]	3.0E-61	[3..354]	[2474..2855]
gi\|116181860, gi... - gi\|88185855\|gb\|EAQ93323.1\| hypothetical protein CHGG_01558 [Chaetomium globosum CBS 148.51], gi\|1161...	5.0E-56	[3..364]	[106..502]
gi\|47221082 - gi\|47221082\|emb\|CAG12776.1\| unnamed protein product [Tetraodon nigroviridis]	7.0E-56	[2..348]	[17..423]
gi\|46116238, gi\|... - gi\|46116238\|ref\|XP_384137.1\| hypothetical protein FG03961.1 [Gibberella zeae PH-1], gi\|42550586\|gb\|E...	8.0E-55	[6..360]	[75..464]
gi\|238482071, gi... - gi\|238482071\|ref\|XP_002372274.1\| amino acid permease (Gap1), putative [Aspergillus flavus NRRL3357],... gi\|169765514 - gi\|169765514\|ref\|XP_001817228.1\| hypothetical protein [Aspergillus oryzae RIB40] gi\|83765083 - gi\|83765083\|dbj\|BAE55226.1\| unnamed protein product [Aspergillus oryzae]	1.0E-54	[4..364]	[76..471]
gi\|39943728, gi\|... - gi\|39943728\|ref\|XP_361401.1\| hypothetical protein MG03875.4 [Magnaporthe grisea 70-15], gb\|EAA50116....	2.0E-53	[5..362]	[40..443]

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Predicted Domain #1

Region A:
Residues: [1-364]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKVQEKYQI SPIFVFFLIH GAQFGAGVLG FARIIAKAAG YDGWMGVLIT GLCIHLLIWM  60
   61 MYFLLKETNG NLIDLQRQTF GKWIGNVFNI IFAAYFLIVS ISVIRTYVEI IQVWMFPTAS 120
  121 TFMLTLFLCL VSYYIISSGF RVITGICVIS VGGTIGYLFL SLFVLKYSHW DNLLPIFTHS 180
  181 FSDILKSAQL SIYSMTGFEI YLMVYPFVKK PMQSHKYAQL GALFSNLLYL FSTLLAFAFF 240
  241 SEKQLLKTIW AQLSMTQVIQ LPFIERLEYI AISGYALVII SSFILPLWAS MRATHEIFRV 300
  301 KQRGILIAFI IITLIISQLL TNRQDINNFI SNASKVSFWL IYVYIPILFI IVWVKRKWKK 360
  361 SKAN

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Detection Method:	FFAS03
Confidence:	1.5
Match:	2a65A
Description:	Crystal structure of LEUTAA, a bacterial homolog of Na+/Cl--dependent neurotransmitter transporters
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits