YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30264801, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	747 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30264801, gi|....

Description	E-value	Query Range	Subject Range
gi\|30022804, gi\|... - gi\|30022804\|ref\|NP_834435.1\| spore germination protein IA [Bacillus cereus ATCC 14579], gi\|29898363\|... gi\|229130012, gi... - gi\|229130012\|ref\|ZP_04258976.1\| Spore germination protein gerIA [Bacillus cereus BDRD-Cer4], gi\|2286...	640.0	[0..1]	[747..1]
gi\|42783920, gi\|... - gi\|42783920\|ref\|NP_981167.1\| spore germination protein GerHA [Bacillus cereus ATCC 10987], gi\|427398...	635.0	[0..1]	[747..1]
gi\|49481396, gi\|... - gi\|49481396\|ref\|YP_038778.1\| spore germination protein [Bacillus thuringiensis serovar konkukian str...	634.0	[0..1]	[747..1]
GERKA_BACSU - Spore germination protein KA OS=Bacillus subtilis (strain 168) GN=gerKA PE=3 SV=2 GRKA_BACSU, GERK... - (P49939) Spore germination protein KA, Spore germination protein KA OS=Bacillus subtilis GN=gerKA PE... gi\|221312506 - gi\|221312506\|ref\|ZP_03594311.1\| germination response to the combination of glucose, fructose, L-aspa... gi\|221317443 - gi\|221317443\|ref\|ZP_03598737.1\| germination response to the combination of glucose, fructose, L-aspa... gi\|221321705 - gi\|221321705\|ref\|ZP_03602999.1\| germination response to the combination of glucose, fructose, L-aspa...	622.0	[0..229]	[740..4]
gi\|66970323, gi\|... - gi\|67078017\|ref\|YP_245637.1\| spore germination protein KA [Bacillus cereus E33L], gi\|66970323\|gb\|AAY...	621.0	[0..243]	[747..13]
gi\|1063254, gi\|2... - pir\|\|I39858 germination response gerKA protein - Bacillus subtilis, gi\|1063254\|dbj\|BAA11254.1\| GerK...	617.0	[0..229]	[740..6]
gi\|56420159, gi\|... - gi\|56420159\|ref\|YP_147477.1\| spore germination protein [Geobacillus kaustophilus HTA426], gi\|5638000...	607.0	[0..268]	[740..42]
gi\|83573786, gi\|... - gi\|83590872\|ref\|YP_430881.1\| GerA spore germination protein [Moorella thermoacetica ATCC 39073], gi\|...	606.0	[0..221]	[739..18]
GERIA_BACCE - Spore germination protein GerIA OS=Bacillus cereus GN=gerIA PE=3 SV=1 gi\|229193019, gi... - gi\|229193019\|ref\|ZP_04319975.1\| Spore germination protein gerIA [Bacillus cereus ATCC 10876], gi\|228...	605.0	[0..87]	[747..8]

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Predicted Domain #1

Region A:
Residues: [1-371]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIWNWLRKKK KLNTTEKNET DNSEQKPNNQ EDDNKEQTRS TKHNKSNNSE QKKEEHKESS  60
   61 QDKQQNQSNQ NQQQSAKQDE SSQGQQNHSK QDDSDQGQQQ HSKQGNSDQG QQQHSKQGDS 120
  121 NQGQQNHSKQ NDSDQGQQQH SKQDESSQEQ QNHSKQDDSD QGQQQHSKQD ESSQEQQNHS 180
  181 KQDDSDQGQQ QHSKQDESSQ EQQNHSKQDD SDQDDSFQDT QQSSKQDDLA QDKQQHSKQD 240
  241 NSDQDKQQNS KGNSIYDFSK PEKDRIHSLQ DLIEKLKKSS DFVNYHTSDD ETMPYWISYY 300
  301 RPSLDGEKLQ KYLMPTLLER PNASLEELKE HIPMSGITIT NDLQKIEDMV LKGHAIVQVN 360
  361 QQDQKCMLAN I

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	5.09691
Match:	1epwA
Description:	Botulinum neurotoxin
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [372-471]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AIDNYRAPTP PLNESTVIGP QEGFVEDIDT NINLVRKRLP VLDLQTKEMI VGEFSKTKVV  60
   61 MMYLDNLAEK DNVDFLEESL RALEYDQIND SAYIQELMGE

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [472-747]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KSIFPLYINT ERTDRVTKAL IDGKIAIFVD GSPSVLLTPV SYFDFFISPE DYNVSWLYAT  60
   61 FSRILRLIAV LFSICATPLY VAVLNYHYEL IPSDLLETLI LSRAQVPFPP LIEALFLELA 120
  121 IDLLREAGAR LPMKVGQTLG IVGGIVIGQA SVQAGLTSNI LLIIVALSAL ASFITPIYKM 180
  181 GNAVRLLRFP FLIFAEIGGL FGISLGFIFL FTHLFRLTSL RKPYALFYPT RQQSVKDSWI 240
  241 RFPLTMIDTR DVQARPQHVK KSAKGISTKH RSDFDD

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits