YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30259450, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	181 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30259450, gi|....

Description	E-value	Query Range	Subject Range
gi\|42783891, gi\|... - gi\|42783891\|ref\|NP_981138.1\| 2'-5' RNA ligase [Bacillus cereus ATCC 10987], gi\|42739821\|gb\|AAS43746....	1.0E-49	[1..181]	[1..181]
gi\|49481476, gi\|... - gi\|49481476\|ref\|YP_038749.1\| 2'-5' RNA ligase [Bacillus thuringiensis serovar konkukian str. 97-27],...	1.0E-48	[1..181]	[1..181]
gi\|47557915, gi\|... - gi\|47565129\|ref\|ZP_00236172.1\| 2'-5' RNA ligase [Bacillus cereus G9241], gi\|47557915\|gb\|EAL16240.1\| ...	2.0E-48	[1..181]	[1..181]
gi\|229112167, gi... - gi\|229112167\|ref\|ZP_04241709.1\| 2'-5' RNA ligase [Bacillus cereus Rock1-15], gi\|228671283\|gb\|EEL2658... gi\|30022774, gi\|... - gi\|30022774\|ref\|NP_834405.1\| 2'-5' RNA ligase [Bacillus cereus ATCC 14579], gi\|29898333\|gb\|AAP11606.... gi\|229129984, gi... - gi\|229129984\|ref\|ZP_04258948.1\| 2'-5' RNA ligase [Bacillus cereus BDRD-Cer4], gi\|228653428\|gb\|EEL093...	2.0E-48	[1..181]	[1..181]
gi\|74490922, gi\|... - gi\|75761597\|ref\|ZP_00741551.1\| 2'-5' RNA ligase [Bacillus thuringiensis serovar israelensis ATCC 356...	4.0E-48	[1..181]	[3..183]
gi\|196040913, gi... - gi\|196040913\|ref\|ZP_03108211.1\| putative 2'-5' RNA ligase family protein [Bacillus cereus NVH0597-99... gi\|225786342, gi... - gi\|225866691\|ref\|YP_002752069.1\| putative 2'-5' RNA ligase family protein [Bacillus cereus 03BB102],... gi\|52140798, gi\|... - gi\|52140798\|ref\|YP_086030.1\| 2'-5' RNA ligase [Bacillus cereus E33L], gi\|51974267\|gb\|AAU15817.1\| 2'-... gi\|229186959, gi... - gi\|229186959\|ref\|ZP_04314113.1\| 2'-5' RNA ligase [Bacillus cereus BGSC 6E1], gi\|228596513\|gb\|EEK5417...	8.0E-48	[1..181]	[1..181]
gi\|152977059, gi... - gi\|89201308\|ref\|ZP_01180053.1\| 2',5' RNA ligase [Bacillus cereus subsp. cytotoxis NVH 391-98], gi\|89...	2.0E-47	[1..181]	[1..181]
gi\|163864631, gi... - gi\|89204199\|ref\|ZP_01182777.1\| 2',5' RNA ligase [Bacillus weihenstephanensis KBAB4], gi\|89157772\|gb\|...	1.0E-45	[1..181]	[1..181]
Y099_PYRHO - UPF0097 protein PH0099 OS=Pyrococcus horikoshii GN=PH0099 PE=1 SV=1 THPR_PYRHO - RNA 2',3'-cyclic phosphodiesterase OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 99...	3.0E-45	[4..181]	[2..184]
THPR_PYRFU - RNA 2',3'-cyclic phosphodiesterase OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 /...	2.0E-44	[4..181]	[2..184]

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Predicted Domain #1

Region A:
Residues: [1-181]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEPHYFVAIT LPNHIKEVLS NYREEMQEEL PFRSWVHKED YHITLSFLGS ATEEQLEGIQ  60
   61 NGLQTLIETK ELSFTLQGFS TFGMEDRPRI FWAKVSENQD LFPLQKQVHA ICEGNGFSLE 120
  121 TRPYHPHITV ARKWVGEEKF NLEHIKEVPE ISFQADTITL YESHVKETPK YKAIAEIKLQ 180
  181 K

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	46.69897
Match:	1vdxA
Description:	Crystal Structure of a Pyrococcus horikoshii protein with similarities to 2'5' RNA-ligase
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits