YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30264675, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	1108 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30264675, gi|....

Description	E-value	Query Range	Subject Range
gi\|49610512, gi\|... - gi\|50119986\|ref\|YP_049153.1\| DNA polymerase III subunit alpha [Pectobacterium atrosepticum SCRI1043]...	0.0	[2..1107]	[5..1158]
gi\|209745712, gi... - pir\|\|B85503 DNA polymerase III, alpha subunit [imported] - Escherichia coli (strain O157:H7, substra... gi\|15799866, gi\|... - gi\|15799866\|ref\|NP_285878.1\| DNA polymerase III subunit alpha [Escherichia coli O157:H7 EDL933], gi\|... DPO3A_ECO57 - DNA polymerase III subunit alpha OS=Escherichia coli O157:H7 GN=dnaE PE=3 SV=1 gi\|13359642, gi\|... - gi\|15829440\|ref\|NP_308213.1\| DNA polymerase III subunit alpha [Escherichia coli O157:H7 str. Sakai],... gi\|217326041, gi... - gi\|217326041\|ref\|ZP_03442125.1\| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str. TW1... gi\|209159877, gi... - gi\|209398477\|ref\|YP_002268792.1\| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str. EC... gi\|208820436, gi... - gi\|208820436\|ref\|ZP_03260756.1\| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str. EC4... gi\|208734037, gi... - gi\|208812760\|ref\|ZP_03254089.1\| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str. EC4... gi\|168782076, gi... - gi\|189000426\|gb\|EDU69412.1\| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str. EC4076]... gi\|187767109, gi... - gi\|187767109\|gb\|EDU30953.1\| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str. EC4196]... gi\|189361079, gi... - gi\|189361079\|gb\|EDU79498.1\| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str. EC4486]... gi\|168764953, gi... - gi\|189365137\|gb\|EDU83553.1\| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str. EC4501]... gi\|208806614, gi... - gi\|208806614\|ref\|ZP_03248951.1\| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str. EC4... gi\|195939880 - gi\|195939880\|ref\|ZP_03085262.1\| DNA polymerase III subunit alpha [Escherichia coli O157:H7 str. EC40... gi\|189375552, gi... - gi\|189375552\|gb\|EDU93968.1\| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str. EC508],... gi\|168789293, gi... - gi\|189371108\|gb\|EDU89524.1\| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str. EC869],... gi\|168758707, gi... - gi\|189354514\|gb\|EDU72933.1\| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str. EC4401]... gi\|188013925, gi... - gi\|188013925\|gb\|EDU52047.1\| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str. EC4113]... gi\|254590717, gi... - gi\|254791317\|ref\|YP_003076154.1\| DNA polymerase III alpha subunit [Escherichia coli O157:H7 str. TW1...	0.0	[2..1107]	[5..1158]
gi\|251783742, gi... - gi\|251783742\|ref\|YP_002998046.1\| hypothetical protein B21_00181 [Escherichia coli BL21], gi\|24237601... gi\|75229832, gi\|... - gi\|75229832\|ref\|ZP_00716359.1\| COG0587: DNA polymerase III, alpha subunit [Escherichia coli B7A], gi... gi\|254160303, gi... - gi\|254160303\|ref\|YP_003043411.1\| DNA polymerase III subunit alpha [Escherichia coli B str. REL606], ... gi\|157159649, gi... - gi\|75194394\|ref\|ZP_00704464.1\| COG0587: DNA polymerase III, alpha subunit [Escherichia coli HS], gi\|... gi\|254287106, gi... - gi\|254287106\|ref\|YP_003052854.1\| DNA polymerase III subunit alpha [Escherichia coli BL21(DE3)], gi\|2... gi\|194421163, gi... - gi\|83584721\|ref\|ZP_00923385.1\| COG0587: DNA polymerase III, alpha subunit [Escherichia coli 101-1], ...	0.0	[2..1107]	[5..1158]
EG10238 - DNA polymerase III alpha subunit / DNA polymerase III, alpha subunit; suppressor of dnaG-Ts gi\|188493055, gi... - gi\|75512196\|ref\|ZP_00734768.1\| COG0587: DNA polymerase III, alpha subunit [Escherichia coli 53638], ... gi\|193063148, gi... - gi\|75258825\|ref\|ZP_00730215.1\| COG0587: DNA polymerase III, alpha subunit [Escherichia coli E22], gi... gi\|169887655, gi... - gi\|170079820\|ref\|YP_001729140.1\| DNA polymerase III alpha subunit [Escherichia coli str. K-12 substr... gi\|157158983, gi... - gi\|75189279\|ref\|ZP_00702546.1\| COG0587: DNA polymerase III, alpha subunit [Escherichia coli E24377A]... gi\|209917374, gi... - gi\|209917374\|ref\|YP_002291458.1\| DNA polymerase III subunit alpha [Escherichia coli SE11], gi\|209910... gi\|218552765, gi... - gi\|218552765\|ref\|YP_002385678.1\| DNA polymerase III subunit alpha [Escherichia coli IAI1], gi\|218359... gi\|238860829, gi... - gi\|238899582\|ref\|YP_002925378.1\| DNA polymerase III alpha subunit [Escherichia coli BW2952], gi\|2388... gi\|89107064, gi\|... - gi\|89107064\|ref\|AP_000844.1\| DNA polymerase III alpha subunit [Escherichia coli str. K-12 substr. W3... gi\|218693649, gi... - gi\|218693649\|ref\|YP_002401316.1\| DNA polymerase III subunit alpha [Escherichia coli 55989], gi\|21835... DP3A_ECOLI, DPO3... - DNA polymerase III subunit alpha (EC 2.7.7.7) - Escherichia coli, (P10443) DNA polymerase III alpha ... EG10238 - DNA polymerase III alpha subunit / DNA polymerase III, alpha subunit; suppressor of dnaG-Ts	0.0	[2..1107]	[5..1158]
gi\|91070828, gi\|... - gi\|91209254\|ref\|YP_539240.1\| DNA polymerase III subunit alpha [Escherichia coli UTI89], gi\|91070828\|... gi\|115511593, gi... - gi\|117622469\|ref\|YP_851382.1\| DNA polymerase III subunit alpha [Escherichia coli APEC O1], gi\|115511... gi\|75240227, gi\|... - gi\|75240227\|ref\|ZP_00724174.1\| COG0587: DNA polymerase III, alpha subunit [Escherichia coli F11], gi... gi\|226902255, gi... - gi\|237704343\|ref\|ZP_04534824.1\| DNA polymerase III subunit alpha [Escherichia sp. 3_2_53FAA], gi\|226... gi\|218363894, gi... - gi\|218557125\|ref\|YP_002390038.1\| DNA polymerase III subunit alpha [Escherichia coli S88], gi\|2183638...	0.0	[2..1107]	[5..1158]
gi\|110341995, gi... - gi\|110640403\|ref\|YP_668131.1\| DNA polymerase III subunit alpha [Escherichia coli 536], gi\|110341995\|...	0.0	[2..1107]	[5..1158]
gi\|194435013, gi... - gi\|83568988\|ref\|ZP_00920452.1\| COG0587: DNA polymerase III, alpha subunit [Shigella dysenteriae 1012...	0.0	[2..1107]	[5..1158]
gi\|73854281, gi\|... - gi\|74310804\|ref\|YP_309223.1\| DNA polymerase III subunit alpha [Shigella sonnei Ss046], gi\|73854281\|g...	0.0	[2..1107]	[5..1158]
gi\|192959133, gi... - gi\|75238887\|ref\|ZP_00722869.1\| COG0587: DNA polymerase III, alpha subunit [Escherichia coli E110019]...	0.0	[2..1107]	[5..1158]
DPO3A_ECOL6 - DNA polymerase III subunit alpha OS=Escherichia coli O6 GN=dnaE PE=3 SV=1 DPO3A_ECOL6 - DNA polymerase III subunit alpha OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=d... gi\|227884903, gi... - gi\|227884903\|ref\|ZP_04002708.1\| DNA polymerase III subunit alpha [Escherichia coli 83972], gi\|227838...	0.0	[2..1107]	[5..1158]

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Predicted Domain #1

Region A:
Residues: [1-1108]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKFVHLQCQT VFSLLKSACK IDELVVRAKE LGYSSLAITD ENVMYGVIPF YKACKKHGIH  60
   61 PIIGLTASIF SEEEEKSYPL VLLAENEIGY QNLLKISSSI MTKSKEGIPK KWLAHYAKGL 120
  121 IAISPGKDGE IEQLLLEDKE SQAEEVARAY QNMFGNFYMS LQHHAIQDEL LLQEKLPAFM 180
  181 NRVNIPVVAT NDVRYINQSD ALVHECLLSV ESGTKMTDPD RPRLKTDQYY LKSSDEMEAL 240
  241 FSHVEEAIYN TVEIAERCRV EIPFHVNQLP KFPVPSNETN DMYLRRVCEE GLQKRYGTPK 300
  301 EVHINRLNHE LNVISSMGFS DYFLIVWDFM KYAHENHILT GPGRGSAAGS LVSYVLEITD 360
  361 IDPIEYDLLF ERFLNPERVT LPDIDIDFPD IRRDEMIRYV KDKYGQLRVA QIVTFGTLAA 420
  421 KAAIRDIARV MGLPPRDIDI FSKLIPSKLG ITLKDAYEES QSLREFIQGN LLHERVFEIA 480
  481 KRVEGLPRHT SIHAAGVIMS QEPLTGSVAI QEGHNDVYVT QYPADALEEL GLLKMDFLGL 540
  541 RNLTLLENII KFIVQKTGKE IDIRNLPLQD AKTFQLLGRG DTTGVFQLES SGMRNVLRGL 600
  601 KPNEFEDIVA VNSLYRPGPM EQIPTFIESK HGKRKIEYLH PDLKPILERT YGVIVYQEQI 660
  661 MQIASKLAGF SLGEADLLRR AVSKKNRDIL DQERKHFVQG CLQNGYDETS AEKIYDLIVR 720
  721 FANYGFNRSH AVAYSMIGYQ LAYLKANYTL EFMTALLSSA IGNEDKIVQY IRETKRKGFH 780
  781 VLPPSLQRSG YNFQIEGNAI RYSLLSIRNI GMATVTALLE EREKKMFEDL FEFCLRMPSK 840
  841 FVTERNLEAF VWSGCFDDFG VSRTNLWKSL KGALEYANLA RDLGDAVPKS KYVQGEELSF 900
  901 IEQLNKEKEV LGFYLSSYPT AQYVKLAKEL EIPSLAQAMR HKKKVQRAIV YITSVRVIRT 960
  961 KKLQKMAFIT FCDQNDEMEA VLFPETYIHF SDKLQEGAIV LVDGTIELRN HKLQWIVNGL1020
 1021 YPLEEMDAYE EKKDASVYVK LPSQYEKKLL NQVTKILFDY SGFAKVLIYY EKEHKMVQLS1080
 1081 RSLSIHPSEE CLGALREIVG EENVVVKI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	1000.0
Match:	2hpiA
Description:	No description for 2hpiA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits