YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30264649, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	468 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30264649, gi|....

Description	E-value	Query Range	Subject Range
gi\|49481337, gi\|... - gi\|49481337\|ref\|YP_038625.1\| DNA replication protein DnaB [Bacillus thuringiensis serovar konkukian ...	0.0	[1..468]	[1..468]
gi\|42783756, gi\|... - gi\|42783756\|ref\|NP_981003.1\| DNA replication protein DnaB [Bacillus cereus ATCC 10987], gi\|42739686\|...	0.0	[1..468]	[1..468]
gi\|52140929, gi\|... - gi\|52140929\|ref\|YP_085900.1\| DNA replication protein [Bacillus cereus E33L], gi\|51974398\|gb\|AAU15948...	0.0	[1..468]	[1..468]
gi\|229129863, gi... - gi\|229129863\|ref\|ZP_04258829.1\| Replication initiation and membrane attachment protein [Bacillus cer... gi\|30022655, gi\|... - gi\|30022655\|ref\|NP_834286.1\| replication initiation and membrane attachment protein [Bacillus cereus... gi\|228671367, gi... - gi\|229112044\|ref\|ZP_04241587.1\| Replication initiation and membrane attachment protein [Bacillus cer... gi\|228723012, gi... - gi\|229048287\|ref\|ZP_04193855.1\| Replication initiation and membrane attachment protein [Bacillus cer... gi\|228636249, gi... - gi\|229147139\|ref\|ZP_04275497.1\| Replication initiation and membrane attachment protein [Bacillus cer...	0.0	[1..468]	[1..469]
gi\|218899732, gi... - gi\|218899732\|ref\|YP_002448143.1\| replication initiation and membrane attachment protein [Bacillus ce... gi\|228903096, gi... - gi\|228903096\|ref\|ZP_04067232.1\| Replication initiation and membrane attachment protein [Bacillus thu... gi\|75763046, gi\|... - gi\|75763046\|ref\|ZP_00742834.1\| Replication initiation and membrane attachment protein [Bacillus thur...	0.0	[1..468]	[1..469]
gi\|163864510, gi... - gi\|89209012\|ref\|ZP_01187482.1\| Replication initiation and membrane attachment [Bacillus weihenstepha...	0.0	[1..468]	[1..468]
gi\|152025714, gi... - gi\|89203673\|ref\|ZP_01182283.1\| Replication initiation and membrane attachment [Bacillus cereus subsp...	0.0	[1..429]	[1..429]
gi\|10175767, gi\|... - gi\|15615707\|ref\|NP_244011.1\| chromosome replication initiation/membrane attachment protein [Bacillus... gi\|25340262 - pir\|\|A84043 chromosome replication initiation/membrane attachment protein dnaB [imported] - Bacillus...	0.0	[6..467]	[5..477]
gi\|221315165 - gi\|221315165\|ref\|ZP_03596970.1\| membrane attachment protein [Bacillus subtilis subsp. subtilis str. ... gi\|221320083 - gi\|221320083\|ref\|ZP_03601377.1\| membrane attachment protein [Bacillus subtilis subsp. subtilis str. ... gi\|221324365 - gi\|221324365\|ref\|ZP_03605659.1\| membrane attachment protein [Bacillus subtilis subsp. subtilis str. ... DNAB_BACSU - Replication initiation and membrane attachment protein OS=Bacillus subtilis GN=dnaB PE=1 SV=1 DNAB_BACSU - Replication initiation and membrane attachment protein OS=Bacillus subtilis (strain 168) GN=dnaB PE=...	0.0	[4..467]	[3..468]
gi\|255006469 - gi\|255006469\|ref\|ZP_05145070.2\| chromosome replication initiation/membrane attachment protein [Staph... gi\|90583555, gi\|... - gi\|90583555\|ref\|ZP_01239310.1\| Replication initiation and membrane attachment [Staphylococcus aureus... gi\|90585444, gi\|... - gi\|90585444\|ref\|ZP_01241153.1\| Replication initiation and membrane attachment [Staphylococcus aureus... gi\|14247457, gi\|... - gi\|15924675\|ref\|NP_372209.1\| chromosome replication initiation/membrane attachment protein [Staphylo... gi\|15927263, gi\|... - gi\|15927263\|ref\|NP_374796.1\| chromosome replication initiation/membrane attachment protein [Staphylo... gi\|269203303\|ref... - replication initiation and membrane attachment protein [Staphylococcus aureus subsp. aureus ED98] gi\|25506247 - pir\|\|B89952 hypothetical protein dnaB [imported] - Staphylococcus aureus (strain N315) gi\|156722137, gi... - gi\|156980002\|ref\|YP_001442261.1\| chromosome replication initiation/membrane attachment protein [Stap... gi\|253317172 - gi\|253317172\|ref\|ZP_04840385.1\| chromosome replication initiation/membrane attachment protein [Staph...	0.0	[9..468]	[10..464]

Back

Predicted Domain #1

Region A:
Residues: [1-170]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKQSWMELL PIDRYKVSAK GLLHNYDRKV LTMLYQPLIG SRAFSLYMTL WGELEQDRVF  60
   61 GKENTHHSLM VTMQMQLPEV YEERVKLEAI GLLKVYIKKE KDIRMFIYEL QPPLSPKQFF 120
  121 DDIVLSIFLY NRLSRTKYNQ VKHYFLEEEF DFASYENVTR SFNDVFGSFN

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [171-314]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PGQLEHAQED LRIPKTTAMP SNEKGDAPKV WNDFFDFSLF VDGLSALVPK KAITDQVREC  60
   61 VITLAYVYDV DVLSMQNIVL GAVTEMQTID MERLRKGARD WYQFENGQAL PVLSERVQPH 120
  121 AARMMKEKEP STQEEMLIKQ LEEI

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [315-468]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SPKQLLKEIS GGAEATKADL QIVEDVMINQ KLTPGVVNVL IYYVMLRSDM KLAKTYVEKI  60
   61 AGHWARKKVG TVAEAMALAK EENRQYQEWA ETKKKGRTSK KTVRKEMVPD WLKEEPKEQE 120
  121 KETVKKDASA EKGASTLEDE RKRLEEVLKK YKRD

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	2.1
Match:	2i5uA
Description:	No description for 2i5uA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits