YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30259271, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	327 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30259271, gi|....

Description	E-value	Query Range	Subject Range
gi\|76167036, gi\|... - gi\|76257950\|ref\|ZP_00765607.1\| transport system permease protein [Chloroflexus aurantiacus J-10-fl],...	2.0E-66	[2..324]	[63..390]
gi\|67987421, gi\|... - gi\|69285730\|ref\|ZP_00617069.1\| transport system permease protein [Kineococcus radiotolerans SRS30216...	2.0E-65	[26..322]	[580..881]
gi\|68185993, gi\|... - gi\|91773082\|ref\|YP_565774.1\| ABC Fe3+-siderophore transporter, inner membrane subunit [Methanococcoi...	3.0E-64	[3..324]	[37..370]
gi\|83375265, gi\|... - gi\|83375265\|ref\|ZP_00920028.1\| similar to ABC-type Fe3+-siderophore transport system permease compon...	4.0E-64	[18..326]	[440..748]
gi\|42739424, gi\|... - gi\|42783495\|ref\|NP_980742.1\| iron compound ABC transporter, permease protein [Bacillus cereus ATCC 1...	4.0E-64	[2..323]	[16..337]
gi\|47556584, gi\|... - gi\|47566554\|ref\|ZP_00237376.1\| ferrichrome transport permease fhuB [Bacillus cereus G9241], gi\|47556...	6.0E-64	[2..324]	[16..338]
gi\|114845489, gi... - gi\|167039782\|ref\|YP_001662767.1\| transport system permease protein [Thermoanaerobacter sp. X514], gi... gi\|167037070, gi... - gi\|76796307\|ref\|ZP_00778672.1\| transport system permease protein [Thermoanaerobacter ethanolicus ATC... gi\|241884179, gi... - gi\|241903412\|ref\|ZP_04788136.1\| transport system permease protein [Thermoanaerobacter brockii subsp.... gi\|242230699, gi... - gi\|242257758\|ref\|ZP_04802610.1\| transport system permease protein [Thermoanaerobacter sp. X513], gi\|...	1.0E-63	[1..324]	[17..354]
gi\|25296945 - pir\|\|AB2129 iron(III) dicitrate transport system permease protein all2585 [imported] - Nostoc sp. (s... gi\|17230077, gi\|... - gi\|17230077\|ref\|NP_486625.1\| iron(III) dicitrate transport system permease protein [Nostoc sp. PCC 7...	2.0E-63	[2..324]	[19..346]
gi\|214034358, gi... - gi\|254479701\|ref\|ZP_05092994.1\| ABC transporter, FeCT family, permease protein [Carboxydibrachium pa... gi\|20808280 - gi\|20808280\|ref\|NP_623451.1\| ABC-type cobalamin/Fe3+-siderophores transport systems, permease compon... gi\|20516881, gi\|... - gi\|20808280\|ref\|NP_623451.1\| ABC-type cobalamin/Fe3+-siderophores transport systems, permease compon...	2.0E-63	[1..324]	[17..354]
Y087_METJA - Putative ABC transporter permease protein MJ0087 OS=Methanocaldococcus jannaschii (strain ATCC 43067... Y087_METJA - Putative ABC transporter permease protein MJ0087 OS=Methanocaldococcus jannaschii GN=MJ0087 PE=3 SV=...	3.0E-63	[2..324]	[12..348]

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Predicted Domain #1

Region A:
Residues: [1-327]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNKKTWSFLI VTALLIVMTS LSAMKGSLEV GIVELVQGIF TGGNEDVEVI KDLRFPRIII  60
   61 ALFTGAALAV SGVLFQAVMK NPLADAGVIG ISSGASFMTL VIITLFPQFF FWTPVFAFLG 120
  121 GAFACYLVYA FSWKSGLSPL RIILVGIAIN AMFTGLNESF ITICGYFIKS IKQTTTSNIT 180
  181 MKTWGDVEIM VTYGTIGLVL ALFVGAWCNL LSLQDKTAKN LGLHVTRVRL IISVIAVLLA 240
  241 AVSTAIAGVI AFVGLLVPHI SRQLVGSDHK VLIPFSALAG ALLILTADTI GRLIVPPNEI 300
  301 PAATIMAVIG GPFLIFLLRK SDKVHGN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	53.0
Match:	2nq2A
Description:	No description for 2nq2A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits