YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|49187411, gi\|...
Organism:	Bacillus anthracis str. Sterne
Length:	594 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|49187411, gi|....

Description	E-value	Query Range	Subject Range
UVRC_BACHK - UvrABC system protein C OS=Bacillus thuringiensis subsp. konkukian (strain 97-27) GN=uvrC PE=3 SV=1 UVRC_BACCZ - UvrABC system protein C OS=Bacillus cereus (strain ZK / E33L) GN=uvrC PE=3 SV=1 UVRC_BACAH - UvrABC system protein C OS=Bacillus thuringiensis (strain Al Hakam) GN=uvrC PE=3 SV=1 gi\|228935829, gi... - gi\|228935829\|ref\|ZP_04098641.1\| UvrABC system protein C [Bacillus thuringiensis serovar andalousiens... gi\|228830145, gi... - gi\|228929566\|ref\|ZP_04092585.1\| UvrABC system protein C [Bacillus thuringiensis serovar pondicherien... UVRC_BACC3 - UvrABC system protein C OS=Bacillus cereus (strain 03BB102) GN=uvrC PE=3 SV=1 gi\|229186752, gi... - gi\|229186752\|ref\|ZP_04313910.1\| UvrABC system protein C [Bacillus cereus BGSC 6E1], gi\|228596765\|gb\|... gi\|229124083, gi... - gi\|229124083\|ref\|ZP_04253275.1\| UvrABC system protein C [Bacillus cereus 95/8201], gi\|228659385\|gb\|E... gi\|228689824, gi... - gi\|229093615\|ref\|ZP_04224716.1\| UvrABC system protein C [Bacillus cereus Rock3-42], gi\|228689824\|gb\|... gi\|228811600, gi... - gi\|228948242\|ref\|ZP_04110526.1\| UvrABC system protein C [Bacillus thuringiensis serovar monterrey BG... UVRC_BACHK - UvrABC system protein C OS=Bacillus thuringiensis subsp. konkukian GN=uvrC PE=3 SV=1 UVRC_BACC0 - UvrABC system protein C OS=Bacillus cereus (strain AH820) GN=uvrC PE=3 SV=1 gi\|196029973, gi... - gi\|196039346\|ref\|ZP_03106652.1\| excinuclease ABC, C subunit [Bacillus cereus NVH0597-99], gi\|1960299... gi\|196034329, gi... - gi\|196034329\|ref\|ZP_03101738.1\| excinuclease ABC, C subunit [Bacillus cereus W], gi\|195992871\|gb\|EDX...	0.0	[1..594]	[1..594]
UVRC_BACC1 - UvrABC system protein C OS=Bacillus cereus (strain ATCC 10987 / NRS 248) GN=uvrC PE=3 SV=1	0.0	[1..594]	[1..594]
gi\|152976918, gi... - gi\|89200347\|ref\|ZP_01179101.1\| Excinuclease ABC, C subunit [Bacillus cereus subsp. cytotoxis NVH 391...	0.0	[2..594]	[4..596]
UVRC_LISIN - UvrABC system protein C OS=Listeria innocua serovar 6a (strain CLIP 11262) GN=uvrC PE=3 SV=1 UVRC_LISIN - UvrABC system protein C OS=Listeria innocua GN=uvrC PE=3 SV=1	0.0	[2..588]	[3..590]
UVRC_LISMF - UvrABC system protein C OS=Listeria monocytogenes serotype 4b (strain F2365) GN=uvrC PE=3 SV=1	0.0	[2..588]	[3..590]
gi\|228903037, gi... - gi\|228903037\|ref\|ZP_04067176.1\| UvrABC system protein C [Bacillus thuringiensis IBL 4222], gi\|228856... gi\|74489937, gi\|... - gi\|75762575\|ref\|ZP_00742428.1\| Excinuclease ABC subunit C [Bacillus thuringiensis serovar israelensi...	0.0	[1..594]	[1..594]
UVRC_LISMC - UvrABC system protein C OS=Listeria monocytogenes serotype 4b (strain CLIP80459) GN=uvrC PE=3 SV=1 gi\|47017496, gi\|... - gi\|47094129\|ref\|ZP_00231851.1\| excinuclease ABC, C subunit [Listeria monocytogenes str. 4b H7858], g... gi\|254823512 - gi\|254823512\|ref\|ZP_05228513.1\| excinuclease ABC subunit C [Listeria monocytogenes FSL J1-194] UVRC_LISMC - UvrABC system protein C OS=Listeria monocytogenes serotype 4b (strain Clip81459) GN=uvrC PE=3 SV=1 gi\|254878572 - gi\|254878572\|ref\|ZP_05251282.1\| excinuclease ABC subunit C [Listeria monocytogenes FSL J2-071] gi\|254852897 - gi\|254852897\|ref\|ZP_05242245.1\| excinuclease ABC subunit C [Listeria monocytogenes FSL R2-503] gi\|255521233 - gi\|255521233\|ref\|ZP_05388470.1\| excinuclease ABC subunit C [Listeria monocytogenes FSL J1-175] gi\|254932888 - gi\|254932888\|ref\|ZP_05266247.1\| excinuclease ABC subunit C [Listeria monocytogenes HPB2262]	0.0	[2..588]	[3..590]
gi\|229013719, gi... - gi\|229013719\|ref\|ZP_04170848.1\| UvrABC system protein C [Bacillus mycoides DSM 2048], gi\|228747641\|g... UVRC_BACWK - UvrABC system protein C OS=Bacillus weihenstephanensis (strain KBAB4) GN=uvrC PE=3 SV=1	0.0	[1..594]	[1..594]
gi\|224503811 - gi\|224503811\|ref\|ZP_03672118.1\| excinuclease ABC subunit C [Listeria monocytogenes FSL R2-561] UVRC_LISMO - UvrABC system protein C OS=Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) GN=uvrC... UVRC_LISMO - UvrABC system protein C OS=Listeria monocytogenes GN=uvrC PE=3 SV=1 gi\|153174313, gi... - gi\|254828594\|ref\|ZP_05233281.1\| excinuclease ABC subunit C [Listeria monocytogenes FSL N3-165], gi\|1...	0.0	[2..588]	[3..590]
UVRC_ENTFA - UvrABC system protein C OS=Enterococcus faecalis (strain ATCC 700802 / V583) GN=uvrC PE=3 SV=1 gi\|229550103, gi... - gi\|229550103\|ref\|ZP_04438828.1\| excinuclease ABC subunit C [Enterococcus faecalis ATCC 29200], gi\|22... gi\|238829270, gi... - gi\|238858175\|ref\|ZP_04648398.1\| excinuclease ABC subunit C [Enterococcus faecalis TUSoD Ef11], gi\|23... UVRC_ENTFA - UvrABC system protein C OS=Enterococcus faecalis GN=uvrC PE=3 SV=1 gi\|227553202, gi... - gi\|227553202\|ref\|ZP_03983251.1\| excinuclease ABC subunit C [Enterococcus faecalis HH22], gi\|22717767... gi\|229545909, gi... - gi\|229545909\|ref\|ZP_04434634.1\| excinuclease ABC subunit C [Enterococcus faecalis TX1332], gi\|229308... gi\|227073851, gi... - gi\|227518671\|ref\|ZP_03948720.1\| excinuclease ABC subunit C [Enterococcus faecalis TX0104], gi\|227073...	0.0	[1..593]	[1..593]

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Predicted Domain #1

Region A:
Residues: [1-118]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHEHLKEKLA ILPDQPGCYL MKDRQGTVIY VGKAKVLKNR VRSYFTGSHD GKTLRLVGEI  60
   61 VDFEYIVTSS NLEALILELN LIKKHDPKYN IQLKDDKTYP FIKITAEKQP RLLITRNV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	35.69897
Match:	1yd6A
Description:	Crystal structure of the GIY-YIG N-terminal endonuclease domain of UvrC from Bacillus caldotenax
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [119-241]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KKDKGKYFGP YPNAQSAHET KKLLDRMYPL RKCSNMPDKV CLYYHMGQCL APCVKEVTEE  60
   61 QNKEIVDEII KFLNGGHKEV RSELETKMYE ASEKLEFERA KELRDQIAHI DAIMEKQKMI 120
  121 MSD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	7.0
Match:	2d7dA
Description:	No description for 2d7dA was found.

Predicted Domain #3

Region A:
Residues: [242-281]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LVDRDVFGYA VDKGWMCVQV FFVRKGKLIE RDVSMFPIYD

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [282-594]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EPEEGFLTFI GQFYENSSHF KPKEIVVPGS IDSELVERFL EVEATQPKRG KKKDLVELAN  60
   61 KNAKIALEEK FYLIERDEER TIKAVENLGK QLGIETPYRI EAFDNSNIQG TNPVSAMIAF 120
  121 IDGKPAKKEY RKYKIKTVQG PDDYESMREV VRRRYTRALK EGLPLPDLII IDGGKGHLAA 180
  181 ASDVLENELG LYIPMAGLVK DDKHKTSHLI IGDPPEPVML ERNSQEFYLL QRVQDEVHRF 240
  241 AITFHRQLHG KSVIQSALDD IPGIGDKRKK VLLKHFGSLK KMKEASIEEF VEAGMPKNVA 300
  301 ETIYTYLTDK KTL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	59.154902
Match:	2nrtA
Description:	No description for 2nrtA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits