YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30264580, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	259 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30264580, gi|....

Description	E-value	Query Range	Subject Range
gi\|51974460, gi\|... - gi\|52140991\|ref\|YP_085840.1\| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus E33L], gi\|51974460...	1.0E-84	[1..259]	[1..259]
gi\|49478675, gi\|... - gi\|49478675\|ref\|YP_038565.1\| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar kon...	3.0E-84	[1..259]	[1..259]
gi\|42739616, gi\|... - gi\|42783687\|ref\|NP_980934.1\| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus ATC...	5.0E-84	[1..259]	[1..259]
gi\|74490747, gi\|... - gi\|75761762\|ref\|ZP_00741700.1\| D-alanyl-D-alanine metallocarboxypeptidase [Bacillus thuringiensis se... gi\|228903031, gi... - gi\|228903031\|ref\|ZP_04067170.1\| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis IBL 4222...	2.0E-83	[1..259]	[1..259]
gi\|228960778, gi... - gi\|228960778\|ref\|ZP_04122416.1\| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar ... gi\|228954782, gi... - gi\|228954782\|ref\|ZP_04116803.1\| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar ... gi\|229129797, gi... - gi\|229129797\|ref\|ZP_04258764.1\| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-Cer4], gi\|... gi\|229111975, gi... - gi\|229111975\|ref\|ZP_04241519.1\| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock1-15], gi\|2... gi\|228711176, gi... - gi\|229072017\|ref\|ZP_04205227.1\| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus F65185], gi\|228... gi\|30022592, gi\|... - gi\|30022592\|ref\|NP_834223.1\| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 14579], gi\|29... gi\|229048218, gi... - gi\|229048218\|ref\|ZP_04193787.1\| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH676], gi\|2287... gi\|229192711, gi... - gi\|229192711\|ref\|ZP_04319670.1\| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 10876], gi... gi\|229180778, gi... - gi\|229180778\|ref\|ZP_04308116.1\| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus 172560W], gi\|22... gi\|229152706, gi... - gi\|229152706\|ref\|ZP_04280893.1\| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus m1550], gi\|2286... gi\|228636459, gi... - gi\|229147071\|ref\|ZP_04275431.1\| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-ST24], gi\|... gi\|206969981, gi... - gi\|206969981\|ref\|ZP_03230935.1\| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus ... gi\|218158864, gi... - gi\|218230907\|ref\|YP_002369309.1\| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus...	2.0E-83	[1..259]	[1..259]
gi\|228747635, gi... - gi\|229013713\|ref\|ZP_04170842.1\| D-alanyl-D-alanine carboxypeptidase [Bacillus mycoides DSM 2048], gi... gi\|163864442, gi... - gi\|89205296\|ref\|ZP_01183867.1\| Peptidase M15B and M15C, D,D-carboxypeptidase VanY/endolysins [Bacill...	4.0E-81	[1..259]	[1..259]
gi\|89200341, gi\|... - gi\|89200341\|ref\|ZP_01179095.1\| Peptidase M15B and M15C, D,D-carboxypeptidase VanY/endolysins [Bacill...	2.0E-75	[1..259]	[1..259]
gi\|229121640, gi... - gi\|229121640\|ref\|ZP_04250865.1\| Peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin [Bacillus... gi\|228832483, gi... - gi\|228927157\|ref\|ZP_04090220.1\| Peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin [Bacillus... gi\|227815110, gi... - gi\|227815110\|ref\|YP_002815119.1\| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthra... gi\|190560931, gi... - gi\|190567876\|ref\|ZP_03020787.1\| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthrac... gi\|218539954, gi... - gi\|218903217\|ref\|YP_002451051.1\| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus... gi\|65319377, gi\|... - gi\|65319377\|ref\|ZP_00392336.1\| COG1876: D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis str.... gi\|254758292 - gi\|254758292\|ref\|ZP_05210319.1\| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthrac... gi\|164714096, gi... - gi\|165870208\|ref\|ZP_02214864.1\| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthrac... gi\|254751420 - gi\|254751420\|ref\|ZP_05203457.1\| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthrac... gi\|167632771, gi... - gi\|167632771\|ref\|ZP_02391097.1\| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthrac... gi\|254743711 - gi\|254743711\|ref\|ZP_05201396.1\| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthrac... gi\|49332827, gi\|... - gi\|49481271\|ref\|YP_036216.1\| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar kon... gi\|167638318, gi... - gi\|167638318\|ref\|ZP_02396595.1\| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthrac... gi\|254737104 - gi\|254737104\|ref\|ZP_05194808.1\| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthrac... gi\|49184934, gi\|... - gi\|49184934\|ref\|YP_028186.1\| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthracis ... gi\|170669471, gi... - gi\|170686395\|ref\|ZP_02877616.1\| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthrac... gi\|254720995 - gi\|254720995\|ref\|ZP_05182786.1\| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthrac... gi\|47502510, gi\|... - gi\|47527362\|ref\|YP_018711.1\| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthracis ... gi\|170706108, gi... - gi\|170706108\|ref\|ZP_02896570.1\| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthrac... gi\|254684660 - gi\|254684660\|ref\|ZP_05148520.1\| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthrac... gi\|30262093, gi\|... - gi\|30262093\|ref\|NP_844470.1\| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthracis ... gi\|177650783, gi... - gi\|177650783\|ref\|ZP_02933680.1\| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthrac... gi\|229602639, gi... - gi\|229602639\|ref\|YP_002866454.1\| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthra...	4.0E-71	[1..256]	[1..246]

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Predicted Domain #1

Region A:
Residues: [1-93]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKIIIISAA TIVIGITSFA YFGSKSPLQN EARAVESQQH SNHQKEEIPA FPKADHNAKK  60
   61 LDNDFSVVTN PDSNLVLVNK HRKLPDGYTP EDL

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.811	N/A	N/A	d.9.1	Interleukin 8-like chemokines

Predicted Domain #2

Region A:
Residues: [94-259]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TRPNVPFTSP KDKEKTLLRK DAADALENMF EAAKKEGLEL TAVSGYRSYK RQKSLHDTYV  60
   61 RRQGKAEADS VSAIPGTSEH QTGLAMDISS KSAKFQLEPI FGETAEGKWV AKHAHEFGFV 120
  121 IRYLEDKTET TEYSYEPWHL RYVGNPYATY IYKHHLTLEE AMEDKK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	23.0
Match:	1r44A
Description:	Crystal Structure of VanX
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.579809417316389	bayes_pls_golite062009
binding	0.116181943513295	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: