YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30259232, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	221 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30259232, gi|....

Description	E-value	Query Range	Subject Range
gi\|69111664 - gi\|69111664\|gb\|AAZ03394.1\| Aqp4-Luc fusion protein [Reporter vector pmuAqp4-Luc]	1.0E-56	[2..220]	[13..233]
gi\|69111702 - gi\|69111702\|gb\|AAZ03395.1\| Aqp4-Luc fusion protein [Reporter vector praAqp4-Luc]	9.0E-56	[2..220]	[13..233]
gi\|2373401 - gi\|2373401\|dbj\|BAA22097.1\| transmembrane protein [Arabidopsis thaliana]	1.0E-53	[2..218]	[52..279]
gi\|116311126, gi... - gi\|125549323\|gb\|EAY95145.1\| hypothetical protein OsI_16963 [Oryza sativa Indica Group], gi\|116311126... PIP12_ORYSJ - Probable aquaporin PIP1-2 OS=Oryza sativa subsp. japonica GN=PIP1-2 PE=2 SV=3	5.0E-53	[2..218]	[53..280]
gi\|113565112, gi... - gi\|115459882\|ref\|NP_001053541.1\| Os04g0559700 [Oryza sativa (japonica cultivar-group)], gi\|113565112...	6.0E-53	[2..218]	[53..280]
gi\|255646628 - gi\|255646628\|gb\|ACU23788.1\| unknown [Glycine max] PIP27_MAIZE - Aquaporin PIP2-7 OS=Zea mays GN=PIP2-7 PE=2 SV=1	8.0E-53	[1..218]	[38..273]
gi\|3551131 - gi\|3551131\|dbj\|BAA32777.1\| plasma membrane aquaporin (PAQ1) [Raphanus sativus]	9.0E-53	[2..218]	[51..278]
gi\|157351139, gi... - gi\|225448357\|ref\|XP_002268084.1\| PREDICTED: aquaporin-like [Vitis vinifera], gi\|157351139\|emb\|CAO413... gi\|8071622 - gi\|8071622\|gb\|AAF71817.1\| putative aquaporin PIP1-1 [Vitis berlandieri x Vitis rupestris]	1.0E-52	[2..218]	[52..279]

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Predicted Domain #1

Region A:
Residues: [1-221]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLKKAIAEFI GTFVLVLFGT GVAVIGGGIE GIGTLGIAMA FGLSIVAMAY SIGTISGCHI  60
   61 NPAVSVAMFI NKRMNAMELC YYVLAQILGG LLGAATLVTI LQSAKTPLDN LGQNGFGTLG 120
  121 LSGAFLVEFI LTFVFILVIV AVTGKKGSSS LAGLVIGFTL VLVHLLGIPL TGTSVNPARS 180
  181 IAPALFVGGE ALSQLWVFIV APILGGIVAA IVGKFILNTE K

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	51.69897
Match:	2b5fA
Description:	Crystal structure of the spinach aquaporin SoPIP2;1 in an open conformation to 3.9 resolution
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits