YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30259157, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	277 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30259157, gi|....

Description	E-value	Query Range	Subject Range
gi\|77995232, gi\|... - gi\|78043117\|ref\|YP_361169.1\| nicotinate-nucleotide pyrophosphorylase [Carboxydothermus hydrogenoform...	4.0E-91	[1..277]	[1..277]
gi\|110803622, gi... - gi\|110803622\|ref\|YP_697707.1\| nicotinate-nucleotide pyrophosphorylase [Clostridium perfringens SM101...	1.0E-90	[1..274]	[1..273]
gi\|110799313, gi... - gi\|110799313\|ref\|YP_694841.1\| nicotinate-nucleotide pyrophosphorylase [Clostridium perfringens ATCC ...	6.0E-90	[1..274]	[1..273]
gi\|18309378, gi\|... - gi\|18309378\|ref\|NP_561312.1\| nicotinate-nucleotide pyrophosphorylase [Clostridium perfringens str. 1...	7.0E-90	[1..274]	[1..273]
gi\|48857399, gi\|... - gi\|67917198\|ref\|ZP_00510863.1\| Nicotinate-nucleotide pyrophosphorylase [Clostridium thermocellum ATC...	4.0E-89	[5..275]	[6..276]
gi\|37199711, gi\|... - gi\|37680961\|ref\|NP_935570.1\| quinolinate phosphoribosyltransferase [Vibrio vulnificus YJ016], gi\|371...	6.0E-89	[2..276]	[30..307]
gi\|219992222, gi... - gi\|89211116\|ref\|ZP_01189493.1\| Nicotinate-nucleotide pyrophosphorylase [Halothermothrix orenii H 168...	6.0E-89	[1..277]	[3..279]
gi\|16930777 - gi\|16930777\|gb\|AAL32048.1\|AF439854_1 NadC [Vibrio vulnificus]	1.0E-88	[2..276]	[18..295]
gi\|146296784, gi... - gi\|82500738\|ref\|ZP_00886138.1\| Nicotinate-nucleotide pyrophosphorylase [Caldicellulosiruptor sacchar...	2.0E-88	[1..275]	[2..276]
gi\|91228624, gi\|... - gi\|91228624\|ref\|ZP_01262541.1\| nicotinate-nucleotide pyrophosphorylase [Vibrio alginolyticus 12G01],...	3.0E-88	[2..276]	[18..295]

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Predicted Domain #1

Region A:
Residues: [1-277]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNRIKVKEAL NRFFLEDIGE RDVTSQLIFP DNLLSKGTFL AKDTGVFTGR LVIEEGFNLI  60
   61 DERIKVELHK KDGDLVEKGE IIATVQGPIA SLLTAERVIL NVIQRMSGIA TMTRKAVLAL 120
  121 DSSHTRICDT RKTMPGLRMF DKYAVVCGGG FNHRFGLYDG VMIKDNHIAF AGSITKAVTS 180
  181 VKEKLGHMVK VEVETETEEQ VREAVAAGAD IIMFDNRTPD EIREFSKIVP SAIVTEASGG 240
  241 ITIEDLSKYG KTGVDYISLG ALTHSVKALD ISFNIEA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	83.0
Match:	1qapA
Description:	Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain; Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), N-terminal domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
nicotinate-nucleotide diphosphorylase (carboxylating) activity	3.12788282156037	bayes_pls_golite062009
nicotinate phosphoribosyltransferase activity	2.88703411089498	bayes_pls_golite062009
binding	1.13767396490743	bayes_pls_golite062009
catalytic activity	0.60409960326459	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: