YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30259124, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	371 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30259124, gi|....

Description	E-value	Query Range	Subject Range
gi\|254898322, gi... - gi\|254898322\|ref\|ZP_05258246.1\| tRNA-specific 2-thiouridylase MnmA [Listeria monocytogenes J0161], g... gi\|127765519, gi... - gi\|254912186\|ref\|ZP_05262198.1\| tRNA-specific 2-thiouridylase MnmA [Listeria monocytogenes J2818], g... MNMA_LISMO, TRMU... - Probable tRNA - Listeria monocytogenes, tRNA-specific 2-thiouridylase mnmA OS=Listeria monocytogenes... gi\|133729902, gi... - gi\|254828254\|ref\|ZP_05232941.1\| tRNA-specific 2-thiouridylase MnmA [Listeria monocytogenes FSL N3-16... gi\|224500677 - gi\|224500677\|ref\|ZP_03669026.1\| tRNA-specific 2-thiouridylase MnmA [Listeria monocytogenes Finland 1... MNMA_LISMO - tRNA-specific 2-thiouridylase MnmA OS=Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD... gi\|224501548 - gi\|224501548\|ref\|ZP_03669855.1\| tRNA-specific 2-thiouridylase MnmA [Listeria monocytogenes FSL R2-56... gi\|47097209, gi\|... - gi\|47097209\|ref\|ZP_00234773.1\| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Listeri... gi\|254936514 - gi\|254936514\|ref\|ZP_05268211.1\| tRNA-specific 2-thiouridylase MnmA [Listeria monocytogenes F6900]	0.0	[6..371]	[6..371]
MNMA2_GEOKA - tRNA-specific 2-thiouridylase MnmA 2 OS=Geobacillus kaustophilus (strain HTA426) GN=mnmA2 PE=3 SV=1 MNMA2_GEOKA - tRNA-specific 2-thiouridylase mnmA 2 OS=Geobacillus kaustophilus GN=mnmA2 PE=3 SV=1	0.0	[1..371]	[1..371]
gi\|29898030, gi\|... - gi\|30022472\|ref\|NP_834103.1\| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus ... gi\|206735142, gi... - gi\|206969454\|ref\|ZP_03230408.1\| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacill...	0.0	[1..371]	[2..372]
gi\|254724677 - gi\|254724677\|ref\|ZP_05186460.1\| tRNA-specific 2-thiouridylase MnmA [Bacillus anthracis str. A1055] MNMA_BACHK - tRNA-specific 2-thiouridylase MnmA OS=Bacillus thuringiensis subsp. konkukian (strain 97-27) GN=mnmA... MNMA_BACHK, TRMU... - Probable tRNA - Bacillus thuringiensis subsp. konkukian, tRNA-specific 2-thiouridylase mnmA OS=Bacil... MNMA_BACCZ - tRNA-specific 2-thiouridylase MnmA OS=Bacillus cereus (strain ZK / E33L) GN=mnmA PE=3 SV=1 gi\|47556614, gi\|... - gi\|47566584\|ref\|ZP_00237406.1\| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillu... MNMA_BACCQ - tRNA-specific 2-thiouridylase MnmA OS=Bacillus cereus (strain Q1) GN=mnmA PE=3 SV=1 MNMA_BACAH - tRNA-specific 2-thiouridylase MnmA OS=Bacillus thuringiensis (strain Al Hakam) GN=mnmA PE=3 SV=2	0.0	[1..371]	[1..371]
MNMA_BACCN - tRNA-specific 2-thiouridylase MnmA OS=Bacillus cytotoxicus (strain DSM 22905 / CIP 110041 / 391-98 /...	0.0	[1..371]	[1..371]
gi\|254931447 - gi\|254931447\|ref\|ZP_05264806.1\| tRNA-specific 2-thiouridylase MnmA [Listeria monocytogenes HPB2262] gi\|254993966 - gi\|254993966\|ref\|ZP_05276156.1\| tRNA-specific 2-thiouridylase MnmA [Listeria monocytogenes FSL J2-06... MNMA_LISMF - tRNA-specific 2-thiouridylase MnmA OS=Listeria monocytogenes serotype 4b (strain F2365) GN=mnmA PE=3... MNMA_LISMC - tRNA-specific 2-thiouridylase MnmA OS=Listeria monocytogenes serotype 4b (strain CLIP80459) GN=mnmA ... gi\|254852136 - gi\|254852136\|ref\|ZP_05241484.1\| tRNA-specific 2-thiouridylase MnmA [Listeria monocytogenes FSL R2-50... gi\|254878999 - gi\|254878999\|ref\|ZP_05251709.1\| tRNA-specific 2-thiouridylase MnmA [Listeria monocytogenes FSL J2-07... gi\|153166945, gi... - gi\|153166945\|ref\|ZP_01927385.1\| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lister... MNMA_LISMC - tRNA-specific 2-thiouridylase mnmA OS=Listeria monocytogenes serotype 4b (strain Clip81459) GN=mnmA ... gi\|254824429 - gi\|254824429\|ref\|ZP_05229430.1\| tRNA-specific 2-thiouridylase MnmA [Listeria monocytogenes FSL J1-19...	0.0	[6..371]	[6..371]
MNMA_BACC1 - tRNA-specific 2-thiouridylase MnmA OS=Bacillus cereus (strain ATCC 10987 / NRS 248) GN=mnmA PE=3 SV=...	0.0	[1..371]	[1..371]
gi\|65321763 - gi\|65321763\|ref\|ZP_00394722.1\| COG0482: Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltr...	0.0	[1..371]	[6..376]
gi\|89100972, gi\|... - gi\|89100972\|ref\|ZP_01173817.1\| TrmU [Bacillus sp. NRRL B-14911], gi\|89084308\|gb\|EAR63464.1\| TrmU [Ba...	0.0	[1..371]	[1..370]

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Predicted Domain #1

Region A:
Residues: [1-371]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNKLPHETRV VIGMSGGVDS SVAALLLKEQ GYDVIGIFMK NWDDTDENGV CTATEDYNDV  60
   61 IEVCNQIGIP YYAVNFEKQY WDKVFTYFLD EYRAGRTPNP DVMCNKEIKF KAFLEHAIAL 120
  121 GADYVATGHY ARVAYMDGEY KMLRGVDDNK DQTYFLNQLS QEQLSKTMFP LGELKKPQIR 180
  181 EMAKEAGLAT AAKKDSTGIC FIGERNFKDF LSNYLPAQPG VMQTLSGEVK GKHDGLMYYT 240
  241 IGQRHGLGIG GNGDPWFAVG KNLKENILYV DQGFHNELLY GDEVIATNVG WVSNEAKEKE 300
  301 FKCTAKFRYR QEDNKVTVQI VDENTVRILC DEPIRAITPG QAVVFYDGDE CLGGATIDEV 360
  361 YRSGKKLDCL G

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	104.0
Match:	2hmaA
Description:	No description for 2hmaA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits