YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30259068, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	262 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30259068, gi|....

Description	E-value	Query Range	Subject Range
PSD_VIBVU - Phosphatidylserine decarboxylase proenzyme OS=Vibrio vulnificus GN=psd PE=3 SV=1 PSD_VIBVY - Phosphatidylserine decarboxylase proenzyme OS=Vibrio vulnificus (strain YJ016) GN=psd PE=3 SV=1 PSD_VIBVU - Phosphatidylserine decarboxylase proenzyme OS=Vibrio vulnificus (strain CMCP6) GN=psd PE=3 SV=1	5.0E-85	[1..257]	[4..283]
PSD_VIBPA - Phosphatidylserine decarboxylase proenzyme OS=Vibrio parahaemolyticus GN=psd PE=3 SV=1 PSD_VIBPA - Phosphatidylserine decarboxylase proenzyme OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 22...	6.0E-85	[1..258]	[4..284]
gi\|84378255, gi\|... - gi\|84386965\|ref\|ZP_00989989.1\| phosphatidylserine decarboxylase [Vibrio splendidus 12B01], gi\|843782...	1.0E-83	[1..257]	[4..283]
gi\|218708315, gi... - gi\|218708315\|ref\|YP_002415936.1\| phosphatidylserine decarboxylase [Vibrio splendidus LGP32], gi\|2183... gi\|85834928, gi\|... - gi\|86147213\|ref\|ZP_01065528.1\| phosphatidylserine decarboxylase [Vibrio sp. MED222], gi\|85834928\|gb\|...	1.0E-83	[1..257]	[4..283]
gi\|91228389, gi\|... - gi\|91228389\|ref\|ZP_01262315.1\| phosphatidylserine decarboxylase [Vibrio alginolyticus 12G01], gi\|911...	8.0E-83	[2..258]	[5..284]
PSD_VIBCM - Phosphatidylserine decarboxylase proenzyme OS=Vibrio cholerae serotype O1 (strain M66-2) GN=psd PE=3... gi\|121591588, gi... - gi\|121591588\|ref\|ZP_01678841.1\| phosphatidylserine decarboxylase [Vibrio cholerae 2740-80], gi\|12154... gi\|229506866, gi... - gi\|229506866\|ref\|ZP_04396374.1\| phosphatidylserine decarboxylase [Vibrio cholerae BX 330286], gi\|229... PSD_VIBCH - Phosphatidylserine decarboxylase proenzyme OS=Vibrio cholerae GN=psd PE=3 SV=1 gi\|153823996, gi... - gi\|229508671\|ref\|ZP_04398165.1\| phosphatidylserine decarboxylase [Vibrio cholerae B33], gi\|229354306... gi\|229516053, gi... - gi\|229516053\|ref\|ZP_04405504.1\| phosphatidylserine decarboxylase [Vibrio cholerae RC9], gi\|229346956... gi\|229606380, gi... - gi\|229606380\|ref\|YP_002877028.1\| phosphatidylserine decarboxylase [Vibrio cholerae MJ-1236], gi\|2293... PSD_VIBCH - Phosphatidylserine decarboxylase proenzyme OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El To... PSD_VIBC3 - Phosphatidylserine decarboxylase proenzyme OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Class... gi\|254847354, gi... - gi\|75829152\|ref\|ZP_00758466.1\| COG0688: Phosphatidylserine decarboxylase [Vibrio cholerae MO10], gi\|... gi\|75814208 - gi\|75814208\|ref\|ZP_00744831.1\| COG0688: Phosphatidylserine decarboxylase [Vibrio cholerae V52]	2.0E-82	[1..257]	[4..283]
PSD_VIBF1 - Phosphatidylserine decarboxylase proenzyme OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=psd PE...	1.0E-81	[1..257]	[5..284]
PSD_PHOPR - Phosphatidylserine decarboxylase proenzyme OS=Photobacterium profundum GN=psd PE=3 SV=1 PSD_PHOPR - Phosphatidylserine decarboxylase proenzyme OS=Photobacterium profundum (strain SS9) GN=psd PE=3 SV=1	1.0E-81	[1..262]	[5..289]
gi\|90413342, gi\|... - gi\|90413342\|ref\|ZP_01221335.1\| phosphatidylserine decarboxylase [Photobacterium profundum 3TCK], gi\|...	3.0E-81	[1..262]	[5..289]
PSD_PSEF5 - Phosphatidylserine decarboxylase proenzyme OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) G...	5.0E-81	[1..256]	[1..282]

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Predicted Domain #1

Region A:
Residues: [1-262]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRRTLYRLMI ELTNGRFTSY TLRKFAQSRL SSIIIPSYAK VFQINQDEME KGLKEYRTLH  60
   61 ELFTRKLKEG KRSIDTDASS IVSPVDGVFA DHGPIEDTKT FDIKGKRYSI VDMLGNEERA 120
  121 QRYAGGTYMV IYLSPSHYHR IHSPLSGSVT ERFVLGRKSY PVNAAGMEYG KEPLSKNYRS 180
  181 VTEVNSDGEH MALVKVGAMF VNSIELLHER DTVQKGEEMA YFTFGSTVVL LFEKDMIEVV 240
  241 QELKSGQELR LGEKIATRLA HK

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.32
Match:	2gprA
Description:	GLUCOSE PERMEASE IIA FROM MYCOPLASMA CAPRICOLUM
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.674366586819828	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: