YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|49187228, gi\|...
Organism:	Bacillus anthracis str. Sterne
Length:	277 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|49187228, gi|....

Description	E-value	Query Range	Subject Range
gi\|170127636, gi... - gi\|170707392\|ref\|ZP_02897846.1\| shikimate 5-dehydrogenase [Bacillus anthracis str. A0389], gi\|170127... gi\|21402380, gi\|... - gi\|65321706\|ref\|ZP_00394665.1\| COG0169: Shikimate 5-dehydrogenase [Bacillus anthracis str. A2012], r... gi\|229268320, gi... - gi\|229603912\|ref\|YP_002868624.1\| shikimate dehydrogenase [Bacillus anthracis str. A0248], gi\|2292683... gi\|47529857, gi\|... - gi\|47529857\|ref\|YP_021206.1\| shikimate 5-dehydrogenase [Bacillus anthracis str. 'Ames Ancestor'], gi... gi\|30264406, gi\|... - gi\|30264406\|ref\|NP_846783.1\| shikimate 5-dehydrogenase [Bacillus anthracis str. Ames], gi\|30259064\|g...	1.0E-74	[1..276]	[1..276]
AROE_BACC1 - Shikimate dehydrogenase (NADP(+)) OS=Bacillus cereus (strain ATCC 10987 / NRS 248) GN=aroE PE=3 SV=1	7.0E-74	[1..277]	[1..277]
AROE_BACCZ - Shikimate dehydrogenase (NADP(+)) OS=Bacillus cereus (strain ZK / E33L) GN=aroE PE=3 SV=1	1.0E-73	[1..277]	[1..277]
AROE_BACHK - Shikimate dehydrogenase (NADP(+)) OS=Bacillus thuringiensis subsp. konkukian (strain 97-27) GN=aroE ... gi\|196029858, gi... - gi\|196039231\|ref\|ZP_03106537.1\| shikimate 5-dehydrogenase [Bacillus cereus NVH0597-99], gi\|196029858... AROE_BACHK - Shikimate dehydrogenase OS=Bacillus thuringiensis subsp. konkukian GN=aroE PE=3 SV=1	1.0E-73	[1..277]	[1..277]
AROE_BACWK - Shikimate dehydrogenase (NADP(+)) OS=Bacillus weihenstephanensis (strain KBAB4) GN=aroE PE=3 SV=1	1.0E-73	[1..277]	[1..277]
AROE_BACCR - Shikimate dehydrogenase (NADP(+)) OS=Bacillus cereus (strain ATCC 14579 / DSM 31 / JCM 2152 / NBRC 1... gi\|228653732, gi... - gi\|229129615\|ref\|ZP_04258583.1\| Shikimate dehydrogenase [Bacillus cereus BDRD-Cer4], gi\|228653732\|gb... gi\|229111808, gi... - gi\|229111808\|ref\|ZP_04241354.1\| Shikimate dehydrogenase [Bacillus cereus Rock1-15], gi\|228671564\|gb\|... gi\|228723285, gi... - gi\|229048041\|ref\|ZP_04193616.1\| Shikimate dehydrogenase [Bacillus cereus AH676], gi\|228723285\|gb\|EEL... gi\|228799083, gi... - gi\|228960604\|ref\|ZP_04122251.1\| Shikimate dehydrogenase [Bacillus thuringiensis serovar pakistani st... gi\|229180612, gi... - gi\|229180612\|ref\|ZP_04307953.1\| Shikimate dehydrogenase [Bacillus cereus 172560W], gi\|228602855\|gb\|E... gi\|228630904, gi... - gi\|229152538\|ref\|ZP_04280728.1\| Shikimate dehydrogenase [Bacillus cereus m1550], gi\|228630904\|gb\|EEK... gi\|229146906, gi... - gi\|229146906\|ref\|ZP_04275270.1\| Shikimate dehydrogenase [Bacillus cereus BDRD-ST24], gi\|228636505\|gb... gi\|206735143, gi... - gi\|206969455\|ref\|ZP_03230409.1\| shikimate 5-dehydrogenase [Bacillus cereus AH1134], gi\|206735143\|gb\|... AROE_BACC4 - Shikimate dehydrogenase (NADP(+)) OS=Bacillus cereus (strain B4264) GN=aroE PE=3 SV=1	2.0E-73	[1..277]	[1..277]
gi\|47569330, gi\|... - gi\|47569330\|ref\|ZP_00240014.1\| shikimate 5-dehydrogenase [Bacillus cereus G9241], gi\|47554001\|gb\|EAL...	4.0E-73	[1..277]	[1..277]
AROE_BACCN - Shikimate dehydrogenase (NADP(+)) OS=Bacillus cytotoxicus (strain DSM 22905 / CIP 110041 / 391-98 / ...	3.0E-72	[1..277]	[1..277]
AROE_BACSU - Shikimate dehydrogenase OS=Bacillus subtilis GN=aroD PE=3 SV=1 gi\|2635012, gi\|1... - gi\|2635012\|emb\|CAB14508.1\| shikimate 5-dehydrogenase [Bacillus subtilis subsp. subtilis str. 168], g...	9.0E-71	[1..277]	[1..277]
AROE_METKA - Shikimate dehydrogenase OS=Methanopyrus kandleri GN=aroE PE=3 SV=1 AROE_METKA - Shikimate dehydrogenase (NADP(+)) OS=Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC...	2.0E-69	[4..275]	[13..289]

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Predicted Domain #1

Region A:
Residues: [1-277]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKQLYGVIGN PIGHSLSPVM HNDAFEHLKM DAHYHAFLVK EEVLGEAVRG LKALGISGFN  60
   61 VTTPHKVAIM DYLDEIDPLA KQIGAVNTVV HKDGKLIGYN TDGIGFVRAL QSISSEPLQE 120
  121 KRILLLGAGG ASRAIYFSLA DAGVKEIDVA NRTVDKAKEL IAACTATVHS VALSLEKATK 180
  181 EQGNYDIIIQ TTTIGMHPRV EHTPLQISSL KKGTIVSDII YNPFETKILC EAKEQGAIIQ 240
  241 NGIDMFVYQG ALAFEMWTGC VPNIERMKQL VIRKLGG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	61.69897
Match:	2hk7A
Description:	No description for 2hk7A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits