YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30264307, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	165 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30264307, gi|....

Description	E-value	Query Range	Subject Range
gi\|47555470, gi\|... - gi\|47567793\|ref\|ZP_00238501.1\| shikimate kinase [Bacillus cereus G9241], gi\|47555470\|gb\|EAL13813.1\| ...	9.0E-32	[1..165]	[1..165]
AROK_BACWK - Shikimate kinase OS=Bacillus weihenstephanensis (strain KBAB4) GN=aroK PE=3 SV=1	1.0E-31	[1..165]	[1..165]
gi\|51974734, gi\|... - gi\|52141265\|ref\|YP_085567.1\| shikimate kinase [Bacillus cereus E33L], gi\|51974734\|gb\|AAU16284.1\| shi...	3.0E-31	[1..165]	[1..165]
gi\|74491593, gi\|... - gi\|75760923\|ref\|ZP_00740933.1\| Shikimate kinase [Bacillus thuringiensis serovar israelensis ATCC 356...	3.0E-31	[1..164]	[6..169]
gi\|196046370, gi... - gi\|196046370\|ref\|ZP_03113596.1\| shikimate kinase [Bacillus cereus 03BB108], gi\|196022840\|gb\|EDX61521... gi\|196027610, gi... - gi\|196041622\|ref\|ZP_03108914.1\| shikimate kinase [Bacillus cereus NVH0597-99], gi\|196027610\|gb\|EDX66... gi\|49330145, gi\|... - gi\|49478589\|ref\|YP_038296.1\| shikimate kinase [Bacillus thuringiensis serovar konkukian str. 97-27],...	7.0E-31	[1..165]	[1..165]
gi\|42783359, gi\|... - gi\|42783359\|ref\|NP_980606.1\| shikimate kinase [Bacillus cereus ATCC 10987], gi\|42739287\|gb\|AAS43214....	8.0E-31	[1..164]	[6..169]
gi\|148263876, gi... - gi\|88936651\|ref\|ZP_01142254.1\| shikimate kinase [Geobacter uraniumreducens Rf4], gi\|88916591\|gb\|EAR3...	1.0E-30	[1..164]	[1..166]
AROK_CALS4 - Shikimate kinase OS=Caldanaerobacter subterraneus subsp. tengcongensis (strain DSM 15242 / JCM 11007... AROK_THETN - Shikimate kinase OS=Thermoanaerobacter tengcongensis GN=aroK PE=3 SV=1	1.0E-30	[1..162]	[1..164]
gi\|89149608, gi\|... - gi\|89202399\|ref\|ZP_01181124.1\| Shikimate kinase [Bacillus cereus subsp. cytotoxis NVH 391-98], gi\|89...	1.0E-30	[1..164]	[39..202]
gi\|95928758, gi\|... - gi\|95928758\|ref\|ZP_01311504.1\| Shikimate kinase [Desulfuromonas acetoxidans DSM 684], gi\|95135103\|gb...	2.0E-30	[2..165]	[4..168]

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Predicted Domain #1

Region A:
Residues: [1-165]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKSIYITGYM GAGKTTIGKA LSKELHMDVV DTDQKIEEKQ GKVIRDIFAE EGEMAFREYE  60
   61 SEMLCSLPVD NVIITTGGGI VEREENRKWM KENGTVVYLY CDPHVIAERL REDTTRPLFQ 120
  121 KKDIDAFVTK FESRRAYYEE AHIHIDTTNK SVKQIMNELK EKINE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	28.522879
Match:	1kagA
Description:	Shikimate kinase (AroK)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.37148167194523	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: