YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30258893, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	432 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30258893, gi|....

Description	E-value	Query Range	Subject Range
gi\|118418589, gi... - gi\|118479364\|ref\|YP_896515.1\| SpoIVB peptidase [Bacillus thuringiensis str. Al Hakam], gi\|118418589\|... gi\|51974792, gi\|... - gi\|52141323\|ref\|YP_085506.1\| stage IV sporulation protein B [Bacillus cereus E33L], gi\|51974792\|gb\|A... gi\|49332477, gi\|... - gi\|49480921\|ref\|YP_038234.1\| stage IV sporulation protein B [Bacillus thuringiensis serovar konkukia... gi\|228690206, gi... - gi\|229093232\|ref\|ZP_04224350.1\| SpoIVB peptidase 42 kDa isoform [Bacillus cereus Rock3-42], gi\|22869...	7.0E-88	[1..432]	[1..432]
gi\|42739219, gi\|... - gi\|42783291\|ref\|NP_980538.1\| stage IV sporulation protein B [Bacillus cereus ATCC 10987], gi\|4273921... gi\|228642483, gi... - gi\|229140907\|ref\|ZP_04269451.1\| SpoIVB peptidase 42 kDa isoform [Bacillus cereus BDRD-ST26], gi\|2286...	1.0E-87	[1..432]	[1..432]
gi\|47552926, gi\|... - gi\|47570402\|ref\|ZP_00241041.1\| stage IV sporulation protein B [Bacillus cereus G9241], gi\|47552926\|g...	1.0E-87	[1..432]	[1..432]
gi\|254757914 - gi\|254757914\|ref\|ZP_05209941.1\| stage IV sporulation protein B [Bacillus anthracis str. Australia 94... gi\|165873118, gi... - gi\|165873118\|ref\|ZP_02217735.1\| stage IV sporulation protein B [Bacillus anthracis str. A0488], gi\|1... gi\|170709208, gi... - gi\|170709208\|ref\|ZP_02899631.1\| stage IV sporulation protein B [Bacillus anthracis str. A0389], gi\|1... gi\|167510138, gi... - gi\|167641895\|ref\|ZP_02400133.1\| stage IV sporulation protein B [Bacillus anthracis str. A0193], gi\|1... gi\|190562930, gi... - gi\|190566011\|ref\|ZP_03018930.1\| stage IV sporulation protein B [Bacillus anthracis Tsiankovskii-I], ... gi\|177654843, gi... - gi\|177654843\|ref\|ZP_02936600.1\| stage IV sporulation protein B [Bacillus anthracis str. A0174], gi\|1... gi\|21402224, gi\|... - gi\|65321558\|ref\|ZP_00394517.1\| COG0750: Predicted membrane-associated Zn-dependent proteases 1 [Baci... gi\|227004005, gi... - gi\|227816949\|ref\|YP_002816958.1\| stage IV sporulation protein B [Bacillus anthracis str. CDC 684], g... gi\|229604504, gi... - gi\|229604504\|ref\|YP_002868467.1\| SpoIVB peptidase [Bacillus anthracis str. A0248], gi\|229268912\|gb\|A... gi\|254721772 - gi\|254721772\|ref\|ZP_05183561.1\| stage IV sporulation protein B [Bacillus anthracis str. A1055] gi\|254736285 - gi\|254736285\|ref\|ZP_05193991.1\| stage IV sporulation protein B [Bacillus anthracis str. Western Nort... gi\|254754043 - gi\|254754043\|ref\|ZP_05206078.1\| stage IV sporulation protein B [Bacillus anthracis str. Vollum]	9.0E-87	[4..432]	[1..429]
gi\|74491424, gi\|... - gi\|75761082\|ref\|ZP_00741079.1\| Stage IV sporulation protein B [Bacillus thuringiensis serovar israel... gi\|229192385, gi... - gi\|229192385\|ref\|ZP_04319348.1\| SpoIVB peptidase 42 kDa isoform [Bacillus cereus ATCC 10876], gi\|228... gi\|228856878, gi... - gi\|228902691\|ref\|ZP_04066838.1\| SpoIVB peptidase 42 kDa isoform [Bacillus thuringiensis IBL 4222], g... gi\|228711411, gi... - gi\|229071680\|ref\|ZP_04204896.1\| SpoIVB peptidase 42 kDa isoform [Bacillus cereus F65185], gi\|2287114... gi\|228792583, gi... - gi\|228967214\|ref\|ZP_04128250.1\| SpoIVB peptidase 42 kDa isoform [Bacillus thuringiensis serovar sott... gi\|228671783, gi... - gi\|229111648\|ref\|ZP_04241198.1\| SpoIVB peptidase 42 kDa isoform [Bacillus cereus Rock1-15], gi\|22867... gi\|229081432, gi... - gi\|229081432\|ref\|ZP_04213932.1\| SpoIVB peptidase 42 kDa isoform [Bacillus cereus Rock4-2], gi\|228701...	1.0E-86	[1..432]	[1..432]
gi\|29897813, gi\|... - gi\|30022256\|ref\|NP_833887.1\| stage IV sporulation protein B [Bacillus cereus ATCC 14579], gi\|2989781... gi\|228630983, gi... - gi\|229152375\|ref\|ZP_04280567.1\| SpoIVB peptidase 42 kDa isoform [Bacillus cereus m1550], gi\|22863098...	2.0E-86	[1..432]	[1..432]
gi\|229013391, gi... - gi\|229013391\|ref\|ZP_04170528.1\| SpoIVB peptidase 42 kDa isoform [Bacillus mycoides DSM 2048], gi\|228... gi\|229134995, gi... - gi\|229134995\|ref\|ZP_04263801.1\| SpoIVB peptidase 42 kDa isoform [Bacillus cereus BDRD-ST196], gi\|228... gi\|228717424, gi... - gi\|229061863\|ref\|ZP_04199193.1\| SpoIVB peptidase 42 kDa isoform [Bacillus cereus AH603], gi\|22871742... gi\|228614509, gi... - gi\|229168917\|ref\|ZP_04296634.1\| SpoIVB peptidase 42 kDa isoform [Bacillus cereus AH621], gi\|22861450... gi\|163864128, gi... - gi\|89207013\|ref\|ZP_01185562.1\| PDZ/DHR/GLGF:Peptidase S55, SpoIVB [Bacillus weihenstephanensis KBAB4...	2.0E-86	[1..432]	[1..430]
gi\|152025329, gi... - gi\|89200810\|ref\|ZP_01179560.1\| PDZ/DHR/GLGF:Peptidase S55, SpoIVB [Bacillus cereus subsp. cytotoxis ...	2.0E-81	[1..432]	[1..432]
gi\|52004167, gi\|... - gi\|52080956\|ref\|YP_079747.1\| serine peptidase SpoIVB [Bacillus licheniformis ATCC 14580], gi\|5200416...	4.0E-75	[8..429]	[24..444]

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Predicted Domain #1

Region A:
Residues: [1-432]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNKLKLERFR KIIGICLLVS LVFIGCFKPL RTFISSPKQL VVFEGQQSEI ASLPVFKASS  60
   61 TDRHVFTVSS NEQKQGLMVN SHQNGEADMV FQLAGFPVKK VNVRVLKDFK VIPGGQSIGV 120
  121 KLNTKGVLVV GHHLIQTEKG KVSPGETAGV QIGDMITEIN GKTIERMSDV APFIHNSGET 180
  181 GEPLNLVLLR DGKHIRTKLT PQKDNGESSY RIGLYIRDSA AGIGTMTFVH PDSMKYGALG 240
  241 HVISDNDTKK PIQVEDGQIM RSTVTSIERG SHGNPGEKLA RFSPDREVIG NITINSPFGI 300
  301 FGKLNTNMTN GVMDKAMPIA LSHQVKEGPA KILTVIDQDK VEAFDIEVVS TVPQKFPATK 360
  361 GMVIKVTDKR LLAKTGGIVQ GMSGSPIVQN GKVIGAVTHV FVNDPTSGYG VHIEWMLHEA 420
  421 GINIYDQERK AS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	47.69897
Match:	1fc6A
Description:	Photosystem II D1 C-terminal processing protease
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits