YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30264219, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	412 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30264219, gi|....

Description	E-value	Query Range	Subject Range
gi\|74490548, gi\|... - gi\|75761968\|ref\|ZP_00741887.1\| DNA polymerase IV [Bacillus thuringiensis serovar israelensis ATCC 35...	0.0	[1..412]	[4..415]
DPO4_BACCR - DNA polymerase IV OS=Bacillus cereus (strain ATCC 14579 / DSM 31 / JCM 2152 / NBRC 15305 / NCIMB 937...	0.0	[1..412]	[4..415]
gi\|47555197, gi\|... - gi\|47568207\|ref\|ZP_00238911.1\| DNA-damage-inducible protein P [Bacillus cereus G9241], gi\|47555197\|g...	0.0	[1..412]	[1..412]
gi\|118479340, gi... - gi\|118479340\|ref\|YP_896491.1\| DNA polymerase IV [Bacillus thuringiensis str. Al Hakam], gi\|118418565... gi\|49330115, gi\|... - gi\|49478559\|ref\|YP_038208.1\| DNA polymerase IV [Bacillus thuringiensis serovar konkukian str. 97-27]...	0.0	[1..412]	[4..415]
DPO4_BACCZ - DNA polymerase IV OS=Bacillus cereus (strain ZK / E33L) GN=dinB PE=3 SV=1	0.0	[1..412]	[4..415]
gi\|42783260, gi\|... - gi\|42783260\|ref\|NP_980507.1\| DNA polymerase IV [Bacillus cereus ATCC 10987], gi\|42739188\|gb\|AAS43115...	0.0	[4..412]	[1..409]
gi\|89154120, gi\|... - gi\|89207942\|ref\|ZP_01186469.1\| DNA-directed DNA polymerase [Bacillus weihenstephanensis KBAB4], gi\|8... gi\|229134960, gi... - gi\|229134960\|ref\|ZP_04263766.1\| Nucleotidyltransferase/DNA polymerase involved in DNA repair [Bacill...	0.0	[1..412]	[1..412]
gi\|89099009, gi\|... - gi\|89099009\|ref\|ZP_01171888.1\| DNA polymerase IV [Bacillus sp. NRRL B-14911], gi\|89086139\|gb\|EAR6526...	0.0	[1..397]	[1..397]
gi\|16079444, gi\|... - gi\|2634822\|emb\|CAB14319.1\| yqjH [Bacillus subtilis subsp. subtilis str. 168], gi\|16079444\|ref\|NP_390... DP41_BACSU, DPO4... - DNA polymerase IV 1 OS=Bacillus subtilis GN=dinB1 PE=3 SV=1, (P54545) DNA polymerase IV 1 (EC 2.7.7....	0.0	[5..399]	[1..395]
DPO4_OCEIH - DNA polymerase IV OS=Oceanobacillus iheyensis GN=dinB PE=3 SV=1 DPO4_OCEIH - DNA polymerase IV OS=Oceanobacillus iheyensis (strain DSM 14371 / JCM 11309 / KCTC 3954 / HTE831) GN...	0.0	[1..408]	[1..406]

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Predicted Domain #1

Region A:
Residues: [1-412]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MREMYPKKGR VILHVDMNCF FASVEIAHDS SLQGKPLAVA GNEKERKGII ITCSYEAREY  60
   61 GIRTTMPLWE AKRLCPQLIV RRPNFTLYRE ASFQMFQILS RFTEKIQPVS IDEGYLDITD 120
  121 CYALGSPLEI AKMIQQALLT ELQLPCSIGI APNLFLAKTA SDMKKPLGIT VLRKRDIPEM 180
  181 IWPLPVGAMH GIGEKTAEKL NDIHIQTIEQ LAKGNEHIIR AKIGKHGVDL QRRAKGMDDR 240
  241 EVDPSQMGQH KSVGNSMTFS KDMDEEKELL DMLQRLSKSV SKRLQKRTLV SYNIQIMIKY 300
  301 HDRRTVTRSK QLKNAIWEER DIFQAASRLW KQHWDGDSVR LLGVTATEIE WKTESVKQLD 360
  361 LFSFEEDAKE EPLLAVIDQI NDKYGMPLLQ RGSQLLRKQE KSFQQKLESK FM

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	68.522879
Match:	2uvrA
Description:	No description for 2uvrA was found.

Predicted functions:

Term	Confidence	Notes
DNA-directed DNA polymerase activity	4.38129837827821	bayes_pls_golite062009
DNA polymerase activity	4.37339889806547	bayes_pls_golite062009
nucleotidyltransferase activity	3.39575274291906	bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups	1.54344143570901	bayes_pls_golite062009
catalytic activity	1.41943047378765	bayes_pls_golite062009
transferase activity	0.98512909175458	bayes_pls_golite062009
DNA primase activity	0.6264375547938	bayes_pls_golite062009
exonuclease activity	0.20278066435985	bayes_pls_golite062009
nucleic acid binding	0.00586413250727191	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: