YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30258808, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	434 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30258808, gi|....

Description	E-value	Query Range	Subject Range
gi\|15024496, gi\|... - gi\|15894824\|ref\|NP_348173.1\| pyrimidine-nucleoside phosphorylase [Clostridium acetobutylicum ATCC 82... gi\|25286848 - pir\|\|F97090 pyrimidine-nucleoside phosphorylase [imported] - Clostridium acetobutylicum	0.0	[1..434]	[1..433]
gi\|195992570, gi... - gi\|196035031\|ref\|ZP_03102438.1\| pyrimidine-nucleoside phosphorylase [Bacillus cereus W], gi\|19599257... gi\|52141406, gi\|... - gi\|52141406\|ref\|YP_085422.1\| pyrimidine-nucleoside phosphorylase [Bacillus cereus E33L], gi\|51974875... gi\|118418513, gi... - gi\|118479288\|ref\|YP_896439.1\| pyrimidine-nucleoside phosphorylase [Bacillus thuringiensis str. Al Ha... gi\|221241594, gi... - gi\|222097536\|ref\|YP_002531593.1\| pyrimidine-nucleoside phosphorylase [Bacillus cereus Q1], gi\|221241... gi\|218905225, gi... - gi\|218905225\|ref\|YP_002453059.1\| pyrimidine-nucleoside phosphorylase [Bacillus cereus AH820], gi\|218... gi\|206976316, gi... - gi\|206976316\|ref\|ZP_03237224.1\| pyrimidine-nucleoside phosphorylase [Bacillus cereus H3081.97], gi\|2... gi\|196047235, gi... - gi\|196047235\|ref\|ZP_03114451.1\| pyrimidine-nucleoside phosphorylase [Bacillus cereus 03BB108], gi\|19... gi\|196038795, gi... - gi\|196038795\|ref\|ZP_03106103.1\| pyrimidine-nucleoside phosphorylase [Bacillus cereus NVH0597-99], gi...	0.0	[1..434]	[1..434]
gi\|42739128, gi\|... - gi\|42783200\|ref\|NP_980447.1\| pyrimidine-nucleoside phosphorylase [Bacillus cereus ATCC 10987], gi\|42...	0.0	[1..434]	[1..434]
gi\|6729724, gi\|4... - gi\|6729724\|pdb\|1BRW\|A Chain A, The Crystal Structure Of Pyrimidine Nucleoside Phosphorylase In A Clo...	0.0	[1..432]	[1..432]
gi\|14247909, gi\|... - gi\|15925126\|ref\|NP_372660.1\| pyrimidine-nucleoside phosphorylase [Staphylococcus aureus subsp. aureu... gi\|13701930, gi\|... - gi\|15927710\|ref\|NP_375243.1\| pyrimidine-nucleoside phosphorylase [Staphylococcus aureus subsp. aureu... gi\|253733030, gi... - gi\|253733030\|ref\|ZP_04867195.1\| pyrimidine-nucleoside phosphorylase [Staphylococcus aureus subsp. au... gi\|25286849 - pir\|\|E90007 pyrimidine nucleoside phosphorylase [imported] - Staphylococcus aureus (strain N315)	0.0	[1..434]	[14..446]
gi\|49331876, gi\|... - gi\|49480320\|ref\|YP_038145.1\| pyrimidine-nucleoside phosphorylase [Bacillus thuringiensis serovar kon...	0.0	[1..434]	[1..434]
gi\|47568143, gi\|... - gi\|47568143\|ref\|ZP_00238847.1\| pyrimidine-nucleoside phosphorylase [Bacillus cereus G9241], gi\|47555...	0.0	[1..434]	[1..434]
PDP_STAHJ - Pyrimidine-nucleoside phosphorylase OS=Staphylococcus haemolyticus (strain JCSC1435) GN=pdp PE=3 SV=...	0.0	[1..434]	[1..433]
gi\|56380689, gi\|... - gi\|56420847\|ref\|YP_148165.1\| pyrimidine-nucleoside phosphorylase (PYNP) [Geobacillus kaustophilus HT...	0.0	[1..432]	[1..432]
gi\|160369151, gi... - gi\|161510342\|ref\|YP_001576001.1\| pyrimidine-nucleoside phosphorylase [Staphylococcus aureus subsp. a... gi\|87127252\|gb\|A... - pyrimidine nucleoside phosphorylase [Staphylococcus aureus subsp. aureus USA300] gi\|253731026, gi... - gi\|253731026\|ref\|ZP_04865191.1\| pyrimidine-nucleoside phosphorylase [Staphylococcus aureus subsp. au... gi\|87127252, gi\|... - gi\|87161278\|ref\|YP_494735.1\| pyrimidine nucleoside phosphorylase [Staphylococcus aureus subsp. aureu...	0.0	[1..434]	[14..446]

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Predicted Domain #1

Region A:
Residues: [1-434]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRMVDLIAKK RDGHALTTEE INFIVEGYTN GDIPDYQVSS LAMAIFFQDM NDQERADLTM  60
   61 AMVNSGDTID LSAIEGVKVD KHSTGGVGDI TTLVLGPLVA ALGVPVAKMS GRGLGHTGGT 120
  121 IDKLEAVPGF HVEIENDEFM RLVNENKIAV IGQSGNLTPA DKKLYALRDV TATVNSIPLI 180
  181 ASSIMSKKIA AGADAIVLDV KTGAGAFMKT DEDAKRLAEA MVRIGNNVGR NTMAVISDMS 240
  241 QPLGEAIGNA LEVQEAIDTL QGKGPKDLEE LCLTLGSQMV YLAGQASSLE DAREKLIEVM 300
  301 NNGKALESFK TFLSAQGGDA SVVDDPSKLP QAQFKIEVEA KEDGYVSEIV ADEIGTAAML 360
  361 LGAGRATKES EIDLAVGLML RKKVGDSVKK GESLVTIYAN RENVEDVKAK IYENMKISKE 420
  421 HVDAPTLVHG IVTE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	140.0
Match:	1brwA
Description:	Pyrimidine nucleoside phosphorylase
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits