YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30258794, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	508 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30258794, gi|....

Description	E-value	Query Range	Subject Range
gi\|50728992 - gi\|50728992\|ref\|XP_416378.1\| PREDICTED: similar to solute carrier family 6 (neurotransmitter transpo...	0.0	[3..500]	[130..665]
gi\|73988924 - gi\|73988924\|ref\|XP_854917.1\| PREDICTED: similar to Sodium- and chloride-dependent glycine transporte...	0.0	[2..506]	[296..866]
gi\|24762405, gi\|... - gi\|7291647\|gb\|AAF47069.1\| CG5549 [Drosophila melanogaster], gi\|24762405\|ref\|NP_611836.1\| CG5549 [Dro...	0.0	[3..499]	[56..627]
gi\|54635249, gi\|... - gi\|54635249\|gb\|EAL24652.1\| GA18963-PA [Drosophila pseudoobscura], gi\|125806587\|ref\|XP_001357528.1\| G...	0.0	[3..506]	[29..604]
S6A13_MOUSE - Sodium- and chloride-dependent GABA transporter 2 OS=Mus musculus GN=Slc6a13 PE=1 SV=1	0.0	[3..500]	[31..566]
S6A13_RAT - Sodium- and chloride-dependent GABA transporter 2 OS=Rattus norvegicus GN=Slc6a13 PE=1 SV=1	0.0	[3..500]	[31..566]
gi\|123997083, gi... - gi\|123997083\|gb\|ABM86143.1\| solute carrier family 6 (neurotransmitter transporter, GABA), member 13 ... SLC6A13 - solute carrier family 6 (neurotransmitter transporter, GABA), member 13	0.0	[3..500]	[31..566]

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Predicted Domain #1

Region A:
Residues: [1-508]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 METRQQWGTR AEFIFAAVGS AVGLGNIWRF PYTAYENGGG AFFLPYLFAL LTTGISLLAF  60
   61 EFALGHRHRG SAPLTFFRIH PRAEFIGWWQ MCVTFIVSTY YAVIIAWSIS YTYFAITGAW 120
  121 GKDTESFLFK EYLHVADKPG QFGGLVPEVL IPLALVWIIV LGVAFKGVKK GIEVVNRIFI 180
  181 PLLVVMFLII VVRAVTMEGA MQGLDAFFKP DWSRIFDGKV WLAAYGQIFF SLSLAFGIMI 240
  241 TYSSYLPKNS DTTNNAFITG FANSGFELLA GIGVFAALGF MANNMGVPVD KVASAGVGLA 300
  301 FVVFPQIINE LPMSPLFGVL FFLSLTVAGI TSLISLAEVC FAAVSEKFSL SRQKTIGIMG 360
  361 TLLVLVSLVF ATRGGLMFLD VVDYFANNFG LITIALVEVV TIGLILRRLP VYQNHANFVS 420
  421 DIKLGTFWRV SLLVITPLML GYMLIDGTIQ NIKKNYGGYP TEFVVTYGWS IAAAFLIVAL 480
  481 IISLKKWNAQ IHSDSAKLEK EWKDRGVS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	73.69897
Match:	2a65A
Description:	Crystal structure of LEUTAA, a bacterial homolog of Na+/Cl--dependent neurotransmitter transporters
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits