YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30264121, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	205 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30264121, gi|....

Description	E-value	Query Range	Subject Range
gi\|229133906, gi... - gi\|229133906\|ref\|ZP_04262729.1\| Nitroreductase [Bacillus cereus BDRD-ST196], gi\|228649607\|gb\|EEL0561... gi\|163940766, gi... - gi\|89207146\|ref\|ZP_01185693.1\| Nitroreductase [Bacillus weihenstephanensis KBAB4], gi\|89154931\|gb\|EA...	6.0E-46	[3..203]	[7..211]
gi\|228825463, gi... - gi\|228934295\|ref\|ZP_04097134.1\| Nitroreductase [Bacillus thuringiensis serovar andalousiensis BGSC 4... gi\|196032437, gi... - gi\|196032437\|ref\|ZP_03099851.1\| nitroreductase family protein [Bacillus cereus W], gi\|195995188\|gb\|E... gi\|49480049, gi\|... - gi\|49480049\|ref\|YP_037122.1\| NAD(P)H nitroreductase [Bacillus thuringiensis serovar konkukian str. 9...	2.0E-45	[3..203]	[7..211]
gi\|42782131, gi\|... - gi\|42782131\|ref\|NP_979378.1\| nitroreductase family protein [Bacillus cereus ATCC 10987], gi\|42738055...	2.0E-45	[3..203]	[7..211]
gi\|29896692, gi\|... - gi\|30021139\|ref\|NP_832770.1\| NAD(P)H nitroreductase [Bacillus cereus ATCC 14579], gi\|29896692\|gb\|AAP... gi\|228637878, gi... - gi\|229145632\|ref\|ZP_04274015.1\| Nitroreductase [Bacillus cereus BDRD-ST24], gi\|228637878\|gb\|EEK94325... gi\|228655222, gi... - gi\|229128363\|ref\|ZP_04257344.1\| Nitroreductase [Bacillus cereus BDRD-Cer4], gi\|228655222\|gb\|EEL11079... gi\|228672973, gi... - gi\|229110489\|ref\|ZP_04240059.1\| Nitroreductase [Bacillus cereus Rock1-15], gi\|228672973\|gb\|EEL28247....	3.0E-45	[3..203]	[7..211]
gi\|52142481, gi\|... - gi\|52142481\|ref\|YP_084348.1\| NAD(P)H nitroreductase [Bacillus cereus E33L], gi\|51975950\|gb\|AAU17500....	3.0E-45	[3..203]	[7..211]
gi\|47568619, gi\|... - gi\|47568619\|ref\|ZP_00239317.1\| nitroreductase family protein [Bacillus cereus G9241], gi\|47554715\|gb...	7.0E-45	[1..203]	[1..211]
YDGI_BACSU - Putative NAD(P)H nitroreductase YdgI OS=Bacillus subtilis (strain 168) GN=ydgI PE=3 SV=1 gi\|221321919 - gi\|221321919\|ref\|ZP_03603213.1\| hypothetical protein BsubsS_03189 [Bacillus subtilis subsp. subtilis... gi\|221317643 - gi\|221317643\|ref\|ZP_03598937.1\| hypothetical protein BsubsJ_03118 [Bacillus subtilis subsp. subtilis... YDGI_BACSU - Putative NAD(P)H nitroreductase ydgI OS=Bacillus subtilis GN=ydgI PE=3 SV=1 gi\|221312719 - gi\|221312719\|ref\|ZP_03594524.1\| hypothetical protein BsubsN3_03154 [Bacillus subtilis subsp. subtili...	3.0E-43	[1..203]	[2..208]
gi\|65321437, gi\|... - gi\|65321437\|ref\|ZP_00394396.1\| COG0778: Nitroreductase [Bacillus anthracis str. A2012], ref\|NP_65808...	1.0E-42	[1..205]	[1..205]
gi\|91201540 - gi\|91201540\|emb\|CAJ74600.1\| similar to NADH dehydrogenase (H(2)O(2) forming NADH oxidase) [Candidatu...	1.0E-42	[4..205]	[1..204]
gi\|171991495, gi... - gi\|68055365\|ref\|ZP_00539511.1\| Nitroreductase [Exiguobacterium sibiricum 255-15], gi\|68008079\|gb\|EAM...	2.0E-42	[2..203]	[5..210]

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Predicted Domain #1

Region A:
Residues: [1-205]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTNDNFFNVL YERTSTRAFN PEKEISSAEL HEILKGAAQA PSAWNLQHWK FLVFQGEDVQ  60
   61 KRLHPIAYNQ QQILDASAVV AILGDLEAYK NVEPVYGPIV EQGFMKEEAK ERLAKNIESA 120
  121 YAREQFPRDT AFSNASLAAM QLMLAAKATG WDTCAIGGFN PQALSEEFNV SSRYVPIMLI 180
  181 TIGESTLKGH PAPRMSVEQV SEWAK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	34.522879
Match:	2b67A
Description:	Crystal structure of the Nitroreductase Family Protein from Streptococcus pneumoniae TIGR4
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.48193963005483	bayes_pls_golite062009
oxidoreductase activity	0.480695441264854	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: