YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30264113, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	414 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30264113, gi|....

Description	E-value	Query Range	Subject Range
gi\|38195972 - gi\|38195972\|gb\|AAR13680.1\| ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Gelidium d...	0.0	[2..413]	[27..448]
RBL_PORAE - Ribulose bisphosphate carboxylase large chain OS=Porphyridium aerugineum GN=rbcL PE=3 SV=1	0.0	[2..413]	[38..459]
gi\|39933012 - gi\|39933012\|gb\|AAC36378.2\| ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Gelidium a...	0.0	[2..413]	[26..447]
gi\|22094063, gi\|... - gi\|27451512\|gb\|AAO14954.1\| ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Gelidium p...	0.0	[2..413]	[28..449]
gi\|7107687 - gi\|7107687\|gb\|AAB17427.2\| ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Gelidium el...	0.0	[2..413]	[36..457]
gi\|38017063 - gi\|38017063\|gb\|AAR07941.1\| ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Gelidium s...	0.0	[2..413]	[27..448]
gi\|6855309 - gi\|6855309\|dbj\|BAA90463.1\| ribulose 1,5-bisphosphate carboxylase large subunit protein [Gelidium lin...	0.0	[2..413]	[2..423]

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Predicted Domain #1

Region A:
Residues: [1-414]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGIIATYLI HDDSHNLEKK AEQIALGLTI GSWTHLPHLL QEQLKQHKGN VLHVEELAEH  60
   61 EHTNSYLRKK VKRGIIKIEY PLLNFSPDLP AILTTTFGKL SLDGEVKLID LTFSDELKKH 120
  121 FPGPKFGIDG IRNLLQVHDR PLLMSIFKGM IGRNIGYLKT QLRDQAIGGV DIVKDDEILF 180
  181 ENALTPLTNR IVSGKEVLQS VYETYGHKTL YAVNVTGRTF DLKENAKRAV QAGADILLFN 240
  241 VFAYGLDVLQ SLAEDDEIPV PIMAHPAVSG AYSASKLYGI SSPLLLGKLL RYAGADFSLF 300
  301 PSPYGSVALE KEEALAISKY LTEDDVFFKK SFSVPSAGIH PGFVPFIIRD FGKDVVINAG 360
  361 GGIHGHPNGA QGGGKAFRTA IDATLQNKPL HEVDDINLHS ALQIWGNPSH EVKL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	1000.0
Match:	1bwvA
Description:	Ribulose 1,5-bisphosphate carboxylase-oxygenase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
ribulose-bisphosphate carboxylase activity	6.24255060911839	bayes_pls_golite062009
catalytic activity	1.11092890710142	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: