YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30264111, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	259 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30264111, gi|....

Description	E-value	Query Range	Subject Range
NIT2_XENTR - Omega-amidase NIT2 OS=Xenopus tropicalis GN=nit2 PE=2 SV=1	1.0E-71	[2..258]	[5..269]
gi\|47214136 - gi\|47214136\|emb\|CAG01394.1\| unnamed protein product [Tetraodon nigroviridis]	2.0E-70	[2..258]	[433..697]
NIT2 - nitrilase family, member 2	3.0E-70	[2..258]	[5..269]
gi\|126698064, gi... - gi\|126698064\|ref\|YP_001086961.1\| putative carbon-nitrogen hydrolase [Clostridium difficile 630], gi\|...	5.0E-70	[2..259]	[5..270]
NIT2B_XENLA - Omega-amidase NIT2-B OS=Xenopus laevis GN=nit2b PE=2 SV=1	1.0E-69	[2..258]	[5..269]
NIT2_RAT - Omega-amidase NIT2 OS=Rattus norvegicus GN=Nit2 PE=1 SV=1	1.0E-69	[2..258]	[5..269]
gi\|49330057, gi\|... - gi\|49478501\|ref\|YP_038095.1\| carbon-nitrogen family hydrolase [Bacillus thuringiensis serovar konkuk...	2.0E-69	[1..259]	[1..259]
gi\|109032725 - gi\|109032725\|ref\|XP_001091514.1\| PREDICTED: similar to nitrilase family, member 2 [Macaca mulatta]	2.0E-69	[2..258]	[55..319]

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Predicted Domain #1

Region A:
Residues: [1-259]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKVACIQMDI FFGDVEKNIE NAKNKISEAM KERPDVIVLP ELWTTGYDLT RLSEIADRDG  60
   61 LETKEKLIEW SKQYGVHIVG GSIAKQTEQG VTNTMYVVTN KGELVNEYSK VHLFQLMDEH 120
  121 KYLIAGNSTG EFKLDDVECA GTICYDIRFP EWMRVHTAKG AKVLFVVAEW PLVRLAHWRL 180
  181 LLQARAVENQ CYVVACNRAG KDPNNEFAGH SLIVDPWGEV VVEANEEESI LFGELTFEKI 240
  241 EEVRKGIPVF ADRRPELYK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	63.69897
Match:	1f89A
Description:	hypothetical protein yl85
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits