YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30264088, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	586 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30264088, gi|....

Description	E-value	Query Range	Subject Range
gi\|29897658, gi\|... - gi\|30022101\|ref\|NP_833732.1\| neopullulanase [Bacillus cereus ATCC 14579], gi\|29897658\|gb\|AAP10933.1\|... gi\|228654220, gi... - gi\|229129294\|ref\|ZP_04258266.1\| Alpha-cyclodextrinase [Bacillus cereus BDRD-Cer4], gi\|228654220\|gb\|E...	0.0	[1..586]	[1..586]
gi\|42739040, gi\|... - gi\|42783112\|ref\|NP_980359.1\| alpha-amylase [Bacillus cereus ATCC 10987], gi\|42739040\|gb\|AAS42967.1\| ...	0.0	[1..586]	[1..586]
gi\|47565894, gi\|... - gi\|47565894\|ref\|ZP_00236933.1\| glycosyl hydrolase, family 13 [Bacillus cereus G9241], gi\|47557174\|gb...	0.0	[1..586]	[1..586]
gi\|49330612, gi\|... - gi\|49479056\|ref\|YP_038074.1\| neopullulanase [Bacillus thuringiensis serovar konkukian str. 97-27], g...	0.0	[1..586]	[1..586]
gi\|51974946, gi\|... - gi\|52141477\|ref\|YP_085352.1\| neopullulanase [Bacillus cereus E33L], gi\|51974946\|gb\|AAU16496.1\| neopu...	0.0	[1..586]	[1..586]
gi\|51038505 - gi\|51038505\|gb\|AAT94159.1\| maltogenic amylase [Bacillus thermoalkalophilus]	0.0	[1..583]	[1..583]
gi\|56419238, gi\|... - gi\|56419238\|ref\|YP_146556.1\| alpha-cyclodextrinase [Geobacillus kaustophilus HTA426], gi\|56379080\|db...	0.0	[1..585]	[1..584]
gi\|163863952, gi... - gi\|89209326\|ref\|ZP_01187761.1\| Glycoside hydrolase, family 13, N-terminal Ig-like region:Alpha amyla... gi\|228648676, gi... - gi\|229134823\|ref\|ZP_04263631.1\| Alpha-cyclodextrinase [Bacillus cereus BDRD-ST196], gi\|228648676\|gb\|...	0.0	[1..586]	[1..586]
gi\|62530449 - gi\|62530449\|gb\|AAX85453.1\| amylase [Bacillus sp. WPD616]	0.0	[1..584]	[1..583]
gi\|7766933, gi\|7... - gi\|7766933\|pdb\|1SMA\|B Chain B, Crystal Structure Of A Maltogenic Amylase, gi\|7766932\|pdb\|1SMA\|A Chai... gi\|3089607 - gi\|3089607\|gb\|AAC15072.1\| maltogenic amylase [Thermus sp. IM6501]	0.0	[1..584]	[1..583]

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Predicted Domain #1

Region A:
Residues: [1-586]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLKEAIYHRP KDNYAYAYDE KTIHIRIRTK RDDVQSTTLI YGDPYEWKDG KWISSSTPMK  60
   61 KTGSTALFDY WFISIEPKFK RLRYGFELKN DTDTLIYAER GFFSTTPNDD VGNFFCFPFI 120
  121 HANDVFKAPS WIKDTVWYQI FPERFANGDH TLNPENTLPW GSAEPTPTNF FGGDFAGIIQ 180
  181 NLDYLVKLGI SGIYFTPIFK AHSNHKYDTI DYMEIDPQFG TKETFKELVQ ACHTHGIKVM 240
  241 LDAVFNHSGY FFDKFQDVLQ NGEQSAYKEW FHIHEFPIRT EPLPNYDTFA FTPYMPKLNT 300
  301 AHPDVKEYLL EVGRYWVREF NIDGWRLDVA NEVDHNFWRE FRSEIKALNS EVYILGEIWH 360
  361 DALPWLQGDQ FDAVMSYPVT NALLSYFAND SIKANEFMKQ ITESLHSYSM NVNEAAFHLL 420
  421 DSHDTPRILT TCNGDKNKLK LLYVFHLSFI GSPCIYYGDE IGMDGGMDPD CRKCMVWDTE 480
  481 EQDHTLFTHV QTLISLRKQY KAFGGHGTFQ FIEANDEYNY ISYTKTYEDE TIFFVLNPTN 540
  541 SDITASLPLH VTGKKIINIY TNEEFSAEAS VLQVTLPPYG FSILKW

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	130.0
Match:	1smaA
Description:	Maltogenic amylase, N-terminal domain N; Maltogenic amylase; Maltogenic amylase, central domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
hydrolase activity, acting on glycosyl bonds	4.03630657705134	bayes_pls_golite062009
hydrolase activity, hydrolyzing O-glycosyl compounds	3.47174391073813	bayes_pls_golite062009
hydrolase activity	2.98140830993539	bayes_pls_golite062009
trehalase activity	2.11042620996316	bayes_pls_golite062009
alpha-amylase activity	2.09193270404736	bayes_pls_golite062009
amylase activity	2.03484942782894	bayes_pls_golite062009
chitinase activity	1.947859226275	bayes_pls_golite062009
catalytic activity	1.85569074294201	bayes_pls_golite062009
glucosidase activity	0.766503513427695	bayes_pls_golite062009
hexosaminidase activity	0.763360027922833	bayes_pls_golite062009
binding	0.63693798355947	bayes_pls_golite062009
maltase activity	0.442635030512661	bayes_pls_golite062009
carbohydrate binding	0.28185708488534	bayes_pls_golite062009
transferase activity, transferring hexosyl groups	0.266938437560648	bayes_pls_golite062009
beta-N-acetylhexosaminidase activity	0.263065978664289	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: