YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30264084, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	343 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30264084, gi|....

Description	E-value	Query Range	Subject Range
gi\|20807285 - gi\|20807285\|ref\|NP_622456.1\| Transcriptional regulator [Thermoanaerobacter tengcongensis MB4] gi\|20807285, gi\|... - gi\|20807285\|ref\|NP_622456.1\| transcriptional regulator [Thermoanaerobacter tengcongensis MB4], gi\|20...	6.0E-92	[2..336]	[1..332]
gi\|167038831, gi... - gi\|167038831\|ref\|YP_001661816.1\| periplasmic binding protein/LacI transcriptional regulator [Thermoa... gi\|242258204, gi... - gi\|242258204\|ref\|ZP_04803030.1\| transcriptional regulator, LacI family [Thermoanaerobacter sp. X513]...	8.0E-92	[1..337]	[1..333]
gi\|89209818, gi\|... - gi\|89209818\|ref\|ZP_01188212.1\| regulatory protein, LacI:Periplasmic binding protein/LacI transcripti...	2.0E-91	[1..337]	[1..332]
gi\|166856755, gi... - gi\|76795834\|ref\|ZP_00778205.1\| regulatory protein, LacI:Periplasmic binding protein/LacI transcripti... gi\|241903736, gi... - gi\|241903736\|ref\|ZP_04788455.1\| transcriptional regulator, LacI family [Thermoanaerobacter brockii s...	4.0E-90	[2..336]	[1..332]
gi\|227014565, gi... - gi\|75827922\|ref\|ZP_00757357.1\| COG1609: Transcriptional regulators [Vibrio cholerae O395], gi\|227119... gi\|116217435, gi... - gi\|75824019\|ref\|ZP_00753489.1\| COG1609: Transcriptional regulators [Vibrio cholerae RC385], gi\|25422... gi\|229369436, gi... - gi\|229606781\|ref\|YP_002877429.1\| transcriptional (co)regulator CytR [Vibrio cholerae MJ-1236], gi\|22... gi\|194537429, gi... - gi\|75819862\|ref\|ZP_00749925.1\| COG1609: Transcriptional regulators [Vibrio cholerae V51], gi\|2542254... gi\|229335030, gi... - gi\|229527398\|ref\|ZP_04416790.1\| transcriptional (co)regulator CytR [Vibrio cholerae 12129(1)], gi\|22... gi\|121727573, gi... - gi\|75816601\|ref\|ZP_00747067.1\| COG1609: Transcriptional regulators [Vibrio cholerae V52], gi\|1217275... gi\|121590909, gi... - gi\|121590909\|ref\|ZP_01678231.1\| transcriptional repressor, LacI family [Vibrio cholerae 2740-80], gi... gi\|229341336, gi... - gi\|229521742\|ref\|ZP_04411160.1\| transcriptional (co)regulator CytR [Vibrio cholerae TM 11079-80], gi... gi\|124115534, gi... - gi\|153213964\|ref\|ZP_01949157.1\| transcriptional repressor, LacI family [Vibrio cholerae 1587], gi\|12... gi\|229516926, gi... - gi\|229516926\|ref\|ZP_04406372.1\| transcriptional (co)regulator CytR [Vibrio cholerae RC9], gi\|2293459... gi\|153221073, gi... - gi\|153221073\|ref\|ZP_01952128.1\| transcriptional repressor, LacI family [Vibrio cholerae MAK 757], gi... gi\|229513597, gi... - gi\|229513597\|ref\|ZP_04403061.1\| transcriptional (co)regulator CytR [Vibrio cholerae TMA 21], gi\|2293... gi\|153819925, gi... - gi\|153819925\|ref\|ZP_01972592.1\| transcriptional repressor, LacI family [Vibrio cholerae NCTC 8457], ... gi\|229354780, gi... - gi\|229507275\|ref\|ZP_04396780.1\| transcriptional (co)regulator CytR [Vibrio cholerae BX 330286], gi\|2... gi\|229353276, gi... - gi\|229509802\|ref\|ZP_04399283.1\| transcriptional (co)regulator CytR [Vibrio cholerae B33], gi\|2293532... gi\|227010681, gi... - gi\|227082793\|ref\|YP_002811344.1\| transcriptional repressor, LacI family [Vibrio cholerae M66-2], gi\|... gi\|15642672, gi\|... - gi\|9657271\|gb\|AAF95818.1\| transcriptional repressor, LacI family [Vibrio cholerae O1 biovar El Tor s... gi\|11277455 - pir\|\|H82046 transcription repressor LacI family VC2677 [imported] - Vibrio cholerae (strain N16961 s... gi\|148875055, gi... - gi\|153829472\|ref\|ZP_01982139.1\| transcriptional repressor, LacI family [Vibrio cholerae 623-39], gi\|... gi\|197752626, gi... - gi\|254285869\|ref\|ZP_04960831.1\| transcriptional repressor, LacI family [Vibrio cholerae AM-19226], g... gi\|254846919, gi... - gi\|75830092\|ref\|ZP_00759377.1\| COG1609: Transcriptional regulators [Vibrio cholerae MO10], gi\|254851... gi\|153825116, gi... - gi\|153825116\|ref\|ZP_01977783.1\| transcriptional repressor, LacI family [Vibrio cholerae MZO-2], gi\|1...	2.0E-88	[2..342]	[1..335]

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Predicted Domain #1

Region A:
Residues: [1-343]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTVTIKDVAK KANVAPSTVS RVIADNPSIS EKTKRRVRKV MSELGYHPNL NARNLANQTT  60
   61 KTLGLVMPSS ASKAFQNPFF PEVIRGISSF AHVEGYALYM STGETEDEIF NGVVKMVQGR 120
  121 QIGGIILLYS RENDRIIQYL HKQNFPFVLI GKPYDRKEEI TYVDNDNYTA AREVAEYLIS 180
  181 LGHKQIAFIG GGSDLLVTRD RLAGMSDALK LADIVLPKEY ILHFDFSRES GQQAVEELMG 240
  241 LKQPPTAIMA TDDLIGLGVL SALSKKGFVV PKDVSIVSFN NALLSEIASP PLSTVDVNIY 300
  301 QLGYEAAKAL VDKVENAEST AKCIIIPHKL LKRQTCDHYA TKS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	85.69897
Match:	1zvvA
Description:	Crystal structure of a ccpa-crh-dna complex
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits