YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30258719, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	513 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30258719, gi|....

Description	E-value	Query Range	Subject Range
gi\|46107656, gi\|... - gi\|46107656\|ref\|XP_380887.1\| hypothetical protein FG00711.1 [Gibberella zeae PH-1], gi\|42547814\|gb\|E...	4.0E-76	[30..507]	[1460..1944]
gi\|60467752, gi\|... - gi\|60467752\|gb\|EAL65769.1\| hypothetical protein DDB0191430 [Dictyostelium discoideum], gi\|29500764\|g... gi\|60467752, gi\|... - gi\|66810832\|ref\|XP_639123.1\| major facilitator superfamily transporter [Dictyostelium discoideum AX4...	6.0E-73	[9..512]	[596..1105]
gi\|70725707, gi\|... - gi\|70725707\|ref\|YP_252621.1\| hypothetical protein SH0706 [Staphylococcus haemolyticus JCSC1435], gi\|...	1.0E-63	[13..498]	[179..666]
gi\|49648930 - gi\|49648930\|emb\|CAG81254.1\| YALI0D20196p [Yarrowia lipolytica] gi\|50551177, gi\|... - gi\|50551177\|ref\|XP_503062.1\| YALI0D20196p [Yarrowia lipolytica], gi\|49648930\|emb\|CAG81254.1\| unnamed...	8.0E-59	[1..511]	[54..566]
gi\|21225257, gi\|... - gi\|7649556\|emb\|CAB89031.1\| putative membrane transport protein. [Streptomyces coelicolor A3(2)], gi\|...	9.0E-59	[3..505]	[21..525]
gi\|32406262, gi\|... - gi\|32406262\|ref\|XP_323744.1\| hypothetical protein [Neurospora crassa], gi\|28918560\|gb\|EAA28232.1\| hy... gi\|85085267 - gi\|85085267\|ref\|XP_957468.1\| hypothetical protein [Neurospora crassa OR74A]	1.0E-57	[2..508]	[56..565]
gi\|29832374, gi\|... - gi\|29832374\|ref\|NP_827008.1\| multidrug-efflux transporter [Streptomyces avermitilis MA-4680], gi\|296...	2.0E-57	[30..513]	[50..532]
gi\|40882232 - gi\|40882232\|emb\|CAF06057.1\| probable aflatoxin efflux pump AFLT [Neurospora crassa]	2.0E-56	[2..508]	[56..573]
gi\|116200341, gi... - gi\|88179605\|gb\|EAQ87073.1\| hypothetical protein CHGG_08326 [Chaetomium globosum CBS 148.51], gi\|1162...	3.0E-55	[3..493]	[143..638]

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Predicted Domain #1

Region A:
Residues: [1-513]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESQLLKKDS NKTKFVVAGL LLGILMAAMD NTIVATAMAT IVGDLGGFDK FVWVTSAYMV  60
   61 ATMAGMPIFG KLSDMYGRKR FYIGGLILFL FGSALCGTAS SIEQLSIYRA IQGIGGGALM 120
  121 PIAFTIMYDI FPPEKRGKMT GLFGAVFGTS SVFGPLLGAY ITDYISWHWV FYINIPLGLI 180
  181 SFFFITKYYS ESLEFRKQKI DWAGAITLVI SIVCLMFALE LGGKEYAWNS TVIIGLFTTV 240
  241 VIMLIIFFFV ERKATEPIIS FHLFKKPLFA ASQGVAFFYG AAFIICTVYI PIFVQGVLGG 300
  301 SASNAGLILT PMMVGSVIGS QTGGQLASRT SYRNIMMVSG VFFVLGIYLL STLTMDTPRL 360
  361 LVTLFMVLAG LGVGFSFSVL SMSSIHKLEM RDRGSATSTN SFFRSLGMTL GVTIFGTIQN 420
  421 HIFTDKLNTL FPPELAKLAP KGEDTSFLLS PGATDKIPAE ILTGIKEALA TSIASTFFWA 480
  481 LIPAVLSIIC ILLMGNERLF TGPKTKQKQK QVS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	23.154902
Match:	1pw4A
Description:	Crystal Structure of the Glycerol-3-Phosphate Transporter from E.Coli
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
transporter activity	4.09176719149278	bayes_pls_golite062009
substrate-specific transporter activity	3.59744164024479	bayes_pls_golite062009
transmembrane transporter activity	3.5865018981083	bayes_pls_golite062009
substrate-specific transmembrane transporter activity	3.54194478414824	bayes_pls_golite062009
ion transmembrane transporter activity	2.21266150105753	bayes_pls_golite062009
organic acid transmembrane transporter activity	2.15783210522667	bayes_pls_golite062009
cation transmembrane transporter activity	1.79369588808394	bayes_pls_golite062009
active transmembrane transporter activity	1.59419818573076	bayes_pls_golite062009
secondary active transmembrane transporter activity	1.22264637452409	bayes_pls_golite062009
polyol transmembrane transporter activity	0.924836669821548	bayes_pls_golite062009
alcohol transmembrane transporter activity	0.924836669821548	bayes_pls_golite062009
glycerol transmembrane transporter activity	0.812001619402678	bayes_pls_golite062009
binding	0.794947356296983	bayes_pls_golite062009
symporter activity	0.74591237387473	bayes_pls_golite062009
solute:cation symporter activity	0.74591237387473	bayes_pls_golite062009
cation:sugar symporter activity	0.143419068761182	bayes_pls_golite062009
sugar:hydrogen symporter activity	0.143419068761182	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: