YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30263982, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	267 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30263982, gi|....

Description	E-value	Query Range	Subject Range
gi\|13813572, gi\|... - gi\|15897351\|ref\|NP_341956.1\| AAA ATPase family protein [Sulfolobus solfataricus P2], gi\|13813572\|gb\|... gi\|25289959 - pir\|\|C90186 AAA family ATPase [imported] - Sulfolobus solfataricus	3.0E-43	[1..262]	[387..659]
gi\|15920578, gi\|... - gi\|15920578\|ref\|NP_376247.1\| hypothetical protein ST0376 [Sulfolobus tokodaii str. 7], gi\|15621361\|d...	2.0E-42	[1..262]	[365..637]
gi\|110605010, gi... - gi\|119719589\|ref\|YP_920084.1\| AAA family ATPase, CDC48 subfamily protein [Thermofilum pendens Hrk 5]...	5.0E-42	[1..264]	[366..638]
gi\|88951313, gi\|... - gi\|88951313\|ref\|ZP_01153827.1\| AAA ATPase, CDC48 [Methanosaeta thermophila PT], gi\|88929435\|gb\|EAR48...	9.0E-42	[1..264]	[361..632]
Y1297_ARCFU - Cell division cycle protein 48 homolog AF_1297 OS=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 ... Y1297_ARCFU, YC9... - (O28972) Cell division cycle protein 48 homolog AF1297, Cell division cycle protein 48 homolog AF_12...	9.0E-42	[1..262]	[368..638]
gi\|85082883 - gi\|85082883\|ref\|XP_957005.1\| hypothetical protein [Neurospora crassa OR74A] gi\|28918088, gi\|... - gi\|32402982\|ref\|XP_322104.1\| hypothetical protein [Neurospora crassa], gi\|28918088\|gb\|EAA27769.1\| hy...	2.0E-41	[1..267]	[410..693]
gi\|76802176, gi\|... - gi\|76802176\|ref\|YP_327184.1\| AAA-type ATPase (transitional ATPase homolog) [Natronomonas pharaonis D...	4.0E-41	[1..261]	[375..644]
gi\|11095437 - gi\|11095437\|gb\|AAG29874.1\| valosin-containing protein [Homo sapiens]	5.0E-41	[1..263]	[18..291]

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Predicted Domain #1

Region A:
Residues: [1-267]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTRIVNTSAC SEETEGYTCE HCNKYIAAIT VEVPQLRIKN KILPTCECVV EREEAKIREA  60
   61 QNFAKKREIE KLFSISNLGE RFSKSTFESF LDRNGSETAY KVAVKYVKTF KEWNGESLML 120
  121 WGEPGNGKTH LAAAIVNELS KKGYIVVFQS VPELLQRIRS TFNSENKENE TQIMRALLEC 180
  181 DLLILDDIGA EKTTEWVEEK LFNIIDGRYR KELPTLYTSN LEPKELKNQV GKRSYDRMVE 240
  241 TSLTVKNEAA SYRREIAKQR LQRFIEV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	41.09691
Match:	1oz4A
Description:	VCP/p97
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits