YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30258597, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	395 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30258597, gi|....

Description	E-value	Query Range	Subject Range
gi\|50903558, gi\|... - gi\|50914484\|ref\|YP_060456.1\| Phage prohead protease [Streptococcus pyogenes MGAS10394], gi\|50903558\|... gi\|50261617, gi\|... - gi\|50261617\|gb\|AAT72385.1\| phage major capsid protein [Streptococcus pyogenes], gi\|40218572\|gb\|AAR83...	1.0E-74	[21..392]	[3..394]
gi\|125714360, gi... - gi\|67916088\|ref\|ZP_00509810.1\| Phage major capsid protein, HK97 family [Clostridium thermocellum ATC...	2.0E-68	[21..394]	[3..400]
gi\|42779481, gi\|... - gi\|42779481\|ref\|NP_976728.1\| HK97 family phage major capsid protein [Bacillus cereus ATCC 10987], gi...	1.0E-67	[21..393]	[3..397]
gi\|77683955, gi\|... - gi\|77683955\|ref\|ZP_00799395.1\| Phage major capsid protein, HK97 [Alkaliphilus metalliredigenes QYMF]...	1.0E-65	[21..393]	[3..402]
gi\|242232150, gi... - gi\|242256320\|ref\|ZP_04801213.1\| phage major capsid protein, HK97 family [Thermoanaerobacter sp. X513... gi\|167039899, gi... - gi\|167039899\|ref\|YP_001662884.1\| HK97 family phage major capsid protein [Thermoanaerobacter sp. X514...	2.0E-64	[21..393]	[3..399]
gi\|238833220, gi... - gi\|238854144\|ref\|ZP_04644491.1\| phage major capsid protein, HK97 family [Lactobacillus gasseri 202-4... gi\|23003008 - gi\|23003008\|ref\|ZP_00046678.1\| COG4653: Predicted phage phi-C31 gp36 major capsid-like protein [Lact... gi\|23003008, gi\|... - gi\|23003008\|ref\|ZP_00046678.1\| hypothetical protein Lgas_03001094 [Lactobacillus gasseri ATCC 33323]...	3.0E-62	[21..393]	[3..391]
gi\|56378908, gi\|... - gi\|56419066\|ref\|YP_146384.1\| hypothetical protein GK0531 [Geobacillus kaustophilus HTA426], gi\|56378...	7.0E-62	[20..393]	[2..375]
gi\|76562106, gi\|... - gi\|76787049\|ref\|YP_329375.1\| prophage LambdaSa04, HK97 family major capsid protein [Streptococcus ag...	5.0E-61	[21..392]	[3..398]
gi\|77411272, gi\|... - gi\|77411272\|ref\|ZP_00787622.1\| phage major capsid protein, HK97 family [Streptococcus agalactiae CJB...	6.0E-61	[21..392]	[3..398]
RPA1888 - RPA1888 putative major capsid protein, R. capsulatus GTA orfg5 homologue 2121168:2122421 forward MW:...	7.0E-61	[17..394]	[18..417]

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Predicted Domain #1

Region A:
Residues: [1-137]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKMKNKFRLS LGNFQYFSKN TLFELKQNLS TIGQQLQKVE NELSQKAIDP SATMESLQTL  60
   61 QQSKKDLQMR FNVIKEQHDT MEAEQKAQFQ TQTGLQSIED PKQKVIAAKA ELVRATIRGG 120
  121 TLSQEARAAL GDKNSTG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	8.0
Match:	2i1jA
Description:	No description for 2i1jA was found.

Predicted Domain #2

Region A:
Residues: [138-395]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GEKILPSTMT NELLHEPFVK NPLREVSTFT SVTNLEIPKV TFTLDDDDFI ADTDTAKELK  60
   61 AEGDVVIFGR HKFKVFVPIS ETILASTDTN LVQVVDQALE SGLAAKEKKV AFTTTPKAGE 120
  121 ESMSFYKAGI KSVKGATLYK AIKSAVADLH EDFRANATIE MRYADYLEII ETLANGSATL 180
  181 YNAQPEQVLG KPVKFCDSAV NPIVGDFRYS HFNYDPNMIY DRDKDVKTGI ELFVLTAWVD 240
  241 HKIKLKSAFR IAEVQTTP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	45.69897
Match:	2fs3A
Description:	Bacteriophage HK97 K169Y Head I
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits