YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30258562, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	716 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30258562, gi|....

Description	E-value	Query Range	Subject Range
gi\|51975041, gi\|... - gi\|52141572\|ref\|YP_085257.1\| penicillin-binding protein [Bacillus cereus E33L], gi\|51975041\|gb\|AAU16...	0.0	[1..716]	[1..716]
gi\|49478447, gi\|... - gi\|49478447\|ref\|YP_037978.1\| penicillin-binding protein [Bacillus thuringiensis serovar konkukian st...	0.0	[1..716]	[1..716]
gi\|42783010, gi\|... - gi\|42783010\|ref\|NP_980257.1\| penicillin-binding protein [Bacillus cereus ATCC 10987], gi\|42738937\|gb...	0.0	[1..716]	[1..716]
gi\|65321243 - gi\|65321243\|ref\|ZP_00394202.1\| COG0768: Cell division protein FtsI/penicillin-binding protein 2 [Bac...	0.0	[27..716]	[2..691]
gi\|47557068, gi\|... - gi\|47565788\|ref\|ZP_00236827.1\| penicillin-binding protein 1 [Bacillus cereus G9241], gi\|47557068\|gb\|...	0.0	[30..716]	[13..699]
gi\|89152929, gi\|... - gi\|89209139\|ref\|ZP_01187596.1\| Peptidoglycan glycosyltransferase [Bacillus weihenstephanensis KBAB4]...	0.0	[30..716]	[13..699]
gi\|29897561, gi\|... - gi\|30022005\|ref\|NP_833636.1\| division specific D,D-transpeptidase / cell division protein ftsI [Baci...	0.0	[1..716]	[1..716]
gi\|75762008, gi\|... - gi\|75762008\|ref\|ZP_00741923.1\| Division specific D,D-transpeptidase / Cell division protein ftsI [Ba...	0.0	[1..716]	[1..716]
gi\|89203110, gi\|... - gi\|89203110\|ref\|ZP_01181807.1\| Peptidoglycan glycosyltransferase [Bacillus cereus subsp. cytotoxis N...	0.0	[30..716]	[13..698]

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Predicted Domain #1

Region A:
Residues: [1-716]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKRNMTKFHT NKGAGYFMIL FLLLFLLLLA RFFYIQATGS VHNQDLNELA KQKHSKTGVL  60
   61 EANRGTIYDQ NGHVLAQDAN SYKLVAELKG AKPVEDKEDT AKKIAGVLGK DEEKILATLN 120
  121 KEDRSQVEFG KLGKGLTKEQ KEQIEALKLP GISFITENAR VYPNGDFASY VVGHARPDDK 180
  181 GIAIGQFGLE KSLDKYLGAS HGEVAYTGDR RGVSLDGGKV NVKAPKNGDN VYLTLDQRIQ 240
  241 SYLEDAMKEA SKHYEPESLI GIVADPKTGK ILGMSSKPSY DPNQENNQYF YNDAIANAFE 300
  301 PGSTMKIFTL AAAINEGVYK GQDYYQSGTY PVGNRKIKDH NGGAGWGSIT FDEGVERSSN 360
  361 VAFAILGDQK LGPERFRKYI HSFGLDEKTK IDLPGEGSNT IVFDQQIQQV TTAFGQGSTV 420
  421 TPIQLVQAAT AIANDGKMMK PYTIDKIVDP ITEEVKLEHK PEEVGKPVTK ETAAQVRQLL 480
  481 ERVVTSPKGT GTAYKVDGYS VGGKTGTAQI PDGKGGYMTG RENYIFSFLG MAPMDDPQLV 540
  541 VYVAVKKPKL KDDESGAQPL ADIFKYVTKN SLEYLKIKPN EVKDPKKYVK EQQTAVPDVT 600
  601 EKTMEEAKKA IDKAKLRPIV LGEGKVQQQV PKATEQTLKG DRVFLVGDKP TMPNIQGWAL 660
  661 RDVMNLAKTL KLNLKPTGTG YVTEQSVPEG TLLQPGTELG VTLVPPLEPQ QEAEKP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	128.0
Match:	1rp5A
Description:	PBP2x from Streptococcus pneumoniae strain 5259 with reduced susceptibility to beta-lactam antibiotics
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits