YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30258552, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	386 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30258552, gi|....

Description	E-value	Query Range	Subject Range
gi\|30088584 - gi\|30088584\|gb\|AAN35158.1\| beta-tubulin [Nowakowskiella elegans]	0.0	[5..351]	[23..387]
gi\|63333579 - gi\|63333579\|gb\|AAY40445.1\| beta-tubulin [Rhizophydium sphaerotheca]	0.0	[5..351]	[23..387]
TBB1_MAIZE - Tubulin beta-1 chain OS=Zea mays GN=TUBB1 PE=2 SV=1	0.0	[5..370]	[38..421]
TBB2_HOMAM - Tubulin beta-2 chain OS=Homarus americanus PE=2 SV=1	0.0	[8..370]	[46..426]
betaTub56D-PA - The gene Ã?Ã?Â²-Tubulin at 56D is referred to in FlyBase by the symbol Dmel\Ã?Ã?Â²Tub56D...	0.0	[5..370]	[47..430]
gi\|55233084 - gi\|55233084\|gb\|AAV48500.1\| beta-tubulin [Plasmodium cynomolgi]	0.0	[5..354]	[29..396]
gi\|2443344 - gi\|2443344\|dbj\|BAA22381.1\| beta-tubulin [Halocynthia roretzi]	0.0	[5..370]	[38..421]
gi\|109432, gi\|537407 - gi\|537407\|emb\|CAA43198.1\| beta tubulin [Cricetulus griseus], pir\|\|S18457 tubulin beta chain (clone 3...	0.0	[5..370]	[38..420]
gi\|30995481 - gi\|30995481\|gb\|AAO59417.2\| beta-tubulin [Schistosoma japonicum]	0.0	[5..370]	[38..421]
gi\|109290430 - gi\|109290430\|gb\|ABG29421.1\| beta tubulin [Culex pipiens pipiens]	0.0	[5..378]	[38..429]

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Predicted Domain #1

Region A:
Residues: [1-386]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLEFDTTQDQ LANIKVIGVG GGGNNAVNRM IEHGVQGVDF IAVNTDAQAL NLSKAETKMQ  60
   61 IGGKLTRGLG AGANPEVGKK AAEESKEQIQ EALRGADMVF VTAGMGGGTG TGAAPVVAQV 120
  121 AKELGALTVG VVTRPFTFEG RKRATQAASG IAAFKENVDT LIVIPNDRLL EIVDKNTPML 180
  181 EAFREADNVL RQGVQGISDL IATPGLINLD FADVKTIMSN RGSALMGIGS GNGENRAAEA 240
  241 AKKAISSPLL ETSIDGAQGV IMNITGGANL SLYEVQEAAD IVASASDPEV NMIFGSVINE 300
  301 GLKDDIVVTV IATGFDDSIA TQPPKPIIRP NVNHTQQQQQ PVAQPPKQRE VKREMKREEP 360
  361 VVHERHSDSD SDDIDIPAFL RNRRRR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	102.0
Match:	2vamA
Description:	No description for 2vamA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits