YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30258506, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	213 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30258506, gi|....

Description	E-value	Query Range	Subject Range
gi\|42738878, gi\|... - gi\|42782951\|ref\|NP_980198.1\| hypothetical protein BCE_3901 [Bacillus cereus ATCC 10987], gi\|42738878...	4.0E-67	[1..213]	[1..213]
gi\|47553814, gi\|... - gi\|47569485\|ref\|ZP_00240165.1\| thiamin pyrophosphokinase [Bacillus cereus G9241], gi\|47553814\|gb\|EAL...	3.0E-66	[1..213]	[1..213]
gi\|163863794, gi... - gi\|89208207\|ref\|ZP_01186724.1\| Thiamine pyrophosphokinase [Bacillus weihenstephanensis KBAB4], gi\|89...	5.0E-66	[1..213]	[1..213]
gi\|51975097, gi\|... - gi\|52141628\|ref\|YP_085200.1\| thiamine pyrophosphokinase [Bacillus cereus E33L], gi\|51975097\|gb\|AAU16...	1.0E-65	[1..213]	[1..213]
gi\|49478910, gi\|... - gi\|49478910\|ref\|YP_037920.1\| thiamine pyrophosphokinase [Bacillus thuringiensis serovar konkukian st...	5.0E-65	[1..213]	[1..213]
gi\|83755026, gi\|... - gi\|83755027\|pdb\|2F17\|B Chain B, Mouse Thiamin Pyrophosphokinase In A Ternary Complex With Pyrithiami...	3.0E-63	[4..212]	[41..262]
TPK1 - thiamin pyrophosphokinase 1	7.0E-62	[4..212]	[21..242]
gi\|114616588 - gi\|114616588\|ref\|XP_519461.2\| PREDICTED: thiamin pyrophosphokinase 1 [Pan troglodytes]	8.0E-62	[4..212]	[21..242]

Back

Predicted Domain #1

Region A:
Residues: [1-213]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIIHILAGGP AEYCADFSRY ENEKVVWAAV DRGVYRLLKG GITPAVAFGD YDSVTEEELV  60
   61 WMGQQTNDLH IVPREKDQTD LEIAINWALE QKPALIRIFG ATGGRLDHGL ANIQMLLKGL 120
  121 EVGIEMCIVD NKNEISVKKV GTHIIEENEN FPYVSFVPVT EIVEGITLLG FKYPLTNKTI 180
  181 EWGSTLCISN ELIDEKGTFS FTSGILMVIR STD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	64.69897
Match:	1ig3A
Description:	Thiamin pyrophosphokinase, substrate-binding domain; Thiamin pyrophosphokinase, catalytic domain
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits