YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30263827, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	258 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30263827, gi|....

Description	E-value	Query Range	Subject Range
UPPS_THETN - Undecaprenyl pyrophosphate synthase OS=Thermoanaerobacter tengcongensis GN=uppS PE=3 SV=1 gi\|223488732, gi... - gi\|254479462\|ref\|ZP_05092789.1\| undecaprenyl pyrophosphate synthetase 1 [Carboxydibrachium pacificum... ISPT_CALS4 - Isoprenyl transferase OS=Caldanaerobacter subterraneus subsp. tengcongensis (strain DSM 15242 / JCM ...	0.0	[15..258]	[4..247]
gi\|218535849, gi... - gi\|218904951\|ref\|YP_002452785.1\| undecaprenyl diphosphate synthase [Bacillus cereus AH820], gi\|21853... gi\|217961243, gi... - gi\|217961243\|ref\|YP_002339811.1\| undecaprenyl diphosphate synthase [Bacillus cereus AH187], gi\|21706... UPPS_BACHK - Undecaprenyl pyrophosphate synthase OS=Bacillus thuringiensis subsp. konkukian GN=uppS PE=3 SV=1 gi\|196042152, gi... - gi\|196042152\|ref\|ZP_03109435.1\| undecaprenyl diphosphate synthase [Bacillus cereus NVH0597-99], gi\|1... gi\|228830678, gi... - gi\|228928871\|ref\|ZP_04091903.1\| Undecaprenyl pyrophosphate synthetase [Bacillus thuringiensis serova... gi\|195990469, gi... - gi\|196036914\|ref\|ZP_03104298.1\| undecaprenyl diphosphate synthase [Bacillus cereus W], gi\|195990469\|... gi\|228935137, gi... - gi\|228935137\|ref\|ZP_04097964.1\| Undecaprenyl pyrophosphate synthetase [Bacillus thuringiensis serova... gi\|206743278, gi... - gi\|206978509\|ref\|ZP_03239366.1\| di-trans,poly-cis-decaprenylcistransferase [Bacillus cereus H3081.97... gi\|225786641, gi... - gi\|225865804\|ref\|YP_002751182.1\| di-trans,poly-cis-decaprenylcistransferase [Bacillus cereus 03BB102... gi\|196044641, gi... - gi\|196044641\|ref\|ZP_03111876.1\| undecaprenyl diphosphate synthase [Bacillus cereus 03BB108], gi\|1960... gi\|228916460, gi... - gi\|228916460\|ref\|ZP_04080026.1\| Undecaprenyl pyrophosphate synthetase [Bacillus thuringiensis serova... gi\|228626126, gi... - gi\|229157399\|ref\|ZP_04285477.1\| Undecaprenyl pyrophosphate synthetase [Bacillus cereus ATCC 4342], g... gi\|228597481, gi... - gi\|229186062\|ref\|ZP_04313232.1\| Undecaprenyl pyrophosphate synthetase [Bacillus cereus BGSC 6E1], gi... gi\|170668209, gi... - gi\|170687893\|ref\|ZP_02879107.1\| undecaprenyl diphosphate synthase [Bacillus anthracis str. A0465], g... gi\|228660112, gi... - gi\|229123336\|ref\|ZP_04252540.1\| Undecaprenyl pyrophosphate synthetase [Bacillus cereus 95/8201], gi\|... gi\|167635808, gi... - gi\|167635808\|ref\|ZP_02394117.1\| undecaprenyl diphosphate synthase [Bacillus anthracis str. A0442], g... gi\|229140464, gi... - gi\|229140464\|ref\|ZP_04269019.1\| Undecaprenyl pyrophosphate synthetase [Bacillus cereus BDRD-ST26], g... gi\|51975134, gi\|... - gi\|52141665\|ref\|YP_085164.1\| undecaprenyl diphosphate synthase [Bacillus cereus E33L], gi\|51975134\|g... gi\|254721991 - gi\|254721991\|ref\|ZP_05183780.1\| di-trans,poly-cis-decaprenylcistransferase [Bacillus anthracis str. ... gi\|254739613 - gi\|254739613\|ref\|ZP_05197307.1\| di-trans,poly-cis-decaprenylcistransferase [Bacillus anthracis str. ... gi\|118418270, gi... - gi\|118479045\|ref\|YP_896196.1\| undecaprenyl pyrophosphate synthetase [Bacillus thuringiensis str. Al ... gi\|228585651, gi... - gi\|229197933\|ref\|ZP_04324649.1\| Undecaprenyl pyrophosphate synthetase [Bacillus cereus m1293], gi\|22... ISPT_BACHK - Isoprenyl transferase OS=Bacillus thuringiensis subsp. konkukian (strain 97-27) GN=uppS PE=3 SV=1 gi\|254683470 - gi\|254683470\|ref\|ZP_05147330.1\| di-trans,poly-cis-decaprenylcistransferase [Bacillus anthracis str. ...	0.0	[1..258]	[1..258]
ISPT_BACC1 - Isoprenyl transferase OS=Bacillus cereus (strain ATCC 10987 / NRS 248) GN=uppS PE=3 SV=1	3.0E-99	[1..258]	[1..258]
gi\|228857295, gi... - gi\|228902326\|ref\|ZP_04066483.1\| Undecaprenyl pyrophosphate synthetase [Bacillus thuringiensis IBL 42... gi\|228909647, gi... - gi\|228909647\|ref\|ZP_04073470.1\| Undecaprenyl pyrophosphate synthetase [Bacillus thuringiensis IBL 20... gi\|229071321, gi... - gi\|229071321\|ref\|ZP_04204544.1\| Undecaprenyl pyrophosphate synthetase [Bacillus cereus F65185], gi\|2... gi\|218542759, gi... - gi\|218898976\|ref\|YP_002447387.1\| di-trans,poly-cis-decaprenylcistransferase [Bacillus cereus G9842],... gi\|228702122, gi... - gi\|229081078\|ref\|ZP_04213588.1\| Undecaprenyl pyrophosphate synthetase [Bacillus cereus Rock4-2], gi\|... ISPT_BACCR - Isoprenyl transferase OS=Bacillus cereus (strain ATCC 14579 / DSM 31 / JCM 2152 / NBRC 15305 / NCIMB... gi\|228922577, gi... - gi\|228922577\|ref\|ZP_04085877.1\| Undecaprenyl pyrophosphate synthetase [Bacillus thuringiensis serova... gi\|228960039, gi... - gi\|228960039\|ref\|ZP_04121703.1\| Undecaprenyl pyrophosphate synthetase [Bacillus thuringiensis serova... gi\|229152022, gi... - gi\|229152022\|ref\|ZP_04280217.1\| Undecaprenyl pyrophosphate synthetase [Bacillus cereus m1550], gi\|22... gi\|228603308, gi... - gi\|229180099\|ref\|ZP_04307443.1\| Undecaprenyl pyrophosphate synthetase [Bacillus cereus 172560W], gi\|... gi\|206732407, gi... - gi\|206972650\|ref\|ZP_03233591.1\| di-trans,poly-cis-decaprenylcistransferase [Bacillus cereus AH1134],... gi\|228654336, gi... - gi\|229129099\|ref\|ZP_04258072.1\| Undecaprenyl pyrophosphate synthetase [Bacillus cereus BDRD-Cer4], g... gi\|229146394, gi... - gi\|229146394\|ref\|ZP_04274765.1\| Undecaprenyl pyrophosphate synthetase [Bacillus cereus BDRD-ST24], g...	8.0E-99	[1..258]	[1..258]
gi\|23128548, gi\|... - gi\|23128548\|ref\|ZP_00110393.1\| COG0020: Undecaprenyl pyrophosphate synthase [Nostoc punctiforme PCC ...	3.0E-98	[18..258]	[9..249]
ISPT1_NOSS1 - Isoprenyl transferase 1 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=uppS1 PE=3 SV=1 gi\|25314096 - pir\|\|AD2180 undecaprenyl pyrophosphate synthetase [imported] - Nostoc sp. (strain PCC 7120)	1.0E-97	[18..258]	[9..249]
gi\|67922228, gi\|... - gi\|67922228\|ref\|ZP_00515742.1\| Di-trans-poly-cis-decaprenylcistransferase [Crocosphaera watsonii WH ...	1.0E-97	[10..258]	[32..280]
ISPT_ANAVT - Isoprenyl transferase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=uppS PE=3 SV=2	2.0E-97	[18..258]	[9..249]
gi\|167037632, gi... - gi\|76796454\|ref\|ZP_00778816.1\| Di-trans-poly-cis-decaprenylcistransferase [Thermoanaerobacter ethano... gi\|241903183, gi... - gi\|241903183\|ref\|ZP_04787910.1\| undecaprenyl diphosphate synthase [Thermoanaerobacter brockii subsp....	5.0E-97	[18..258]	[9..249]
ISPT_HELMO - Isoprenyl transferase OS=Heliobacillus mobilis GN=uppS PE=3 SV=1	6.0E-97	[1..258]	[1..258]

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Predicted Domain #1

Region A:
Residues: [1-258]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMFKNFPFFK GKKDTSFDHL VEEVKKGYIP EHIAIIMDGN GRWAKRRAMP RIAGHHEGMQ  60
   61 VVKKITKFAS KLNVKVLTLY AFSTENWKRP KKEVDYLMQL PEEFLGTFLP ELIEENVQVR 120
  121 VIGQQDRLPT HTRRAMEKAM EETKENTGLI LNFALNYGSR DEIVSAVQHM MKDSEEGKVR 180
  181 VEDVSEEMLS SYLMTSSLPD PELLIRTSGE LRISNFMLWQ IAYSEFWFTD VYWPDFTEEH 240
  241 LLNAITDFQH RGRRFGGV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	89.69897
Match:	1f75A
Description:	Undecaprenyl diphosphate synthase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
prenyltransferase activity	4.27318114514627	bayes_pls_golite062009
di-trans,poly-cis-decaprenylcistransferase activity	3.07573514495519	bayes_pls_golite062009
catalytic activity	0.878978773660153	bayes_pls_golite062009
binding	0.458704366412361	bayes_pls_golite062009
transferase activity	0.273947729320601	bayes_pls_golite062009
transferase activity, transferring alkyl or aryl (other than methyl) groups	0.256467886977999	bayes_pls_golite062009
protein binding	0.11675780767527	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: