YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30258454, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	299 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30258454, gi|....

Description	E-value	Query Range	Subject Range
gi\|51975150, gi\|... - gi\|52141681\|ref\|YP_085147.1\| polysaccharide deacetylase [Bacillus cereus E33L], gi\|51975150\|gb\|AAU16...	2.0E-73	[1..299]	[1..299]
gi\|47569083, gi\|... - gi\|47569083\|ref\|ZP_00239772.1\| polysaccharide deacetylase, putative [Bacillus cereus G9241], gi\|4755...	7.0E-73	[1..299]	[1..299]
gi\|49329941, gi\|... - gi\|49478385\|ref\|YP_037867.1\| polysaccharide deacetylase [Bacillus thuringiensis serovar konkukian st... gi\|196042162, gi... - gi\|196042162\|ref\|ZP_03109445.1\| putative polysaccharide deacetylase [Bacillus cereus NVH0597-99], gi...	1.0E-72	[1..299]	[1..299]
gi\|42738821, gi\|... - gi\|42782894\|ref\|NP_980141.1\| polysaccharide deacetylase, putative [Bacillus cereus ATCC 10987], gi\|4...	4.0E-72	[1..299]	[1..299]
gi\|29897451, gi\|... - gi\|30021895\|ref\|NP_833526.1\| chitooligosaccharide deacetylase [Bacillus cereus ATCC 14579], gi\|29897... gi\|228723739, gi... - gi\|229047492\|ref\|ZP_04193082.1\| Polysaccharide deacetylase [Bacillus cereus AH676], gi\|228723739\|gb\|... gi\|228799539, gi... - gi\|228960023\|ref\|ZP_04121687.1\| Polysaccharide deacetylase [Bacillus thuringiensis serovar pakistani... gi\|229146377, gi... - gi\|229146377\|ref\|ZP_04274748.1\| Polysaccharide deacetylase [Bacillus cereus BDRD-ST24], gi\|228637010... gi\|229129082, gi... - gi\|229129082\|ref\|ZP_04258055.1\| Polysaccharide deacetylase [Bacillus cereus BDRD-Cer4], gi\|228654319... gi\|228672053, gi... - gi\|229111277\|ref\|ZP_04240830.1\| Polysaccharide deacetylase [Bacillus cereus Rock1-15], gi\|228672053\|...	5.0E-72	[1..299]	[1..299]
gi\|75763847, gi\|... - gi\|75763847\|ref\|ZP_00743496.1\| Chitooligosaccharide deacetylase [Bacillus thuringiensis serovar isra... gi\|228849919, gi... - gi\|228909630\|ref\|ZP_04073453.1\| Polysaccharide deacetylase [Bacillus thuringiensis IBL 200], gi\|2288...	6.0E-72	[1..299]	[1..299]
gi\|228648874, gi... - gi\|229134613\|ref\|ZP_04263423.1\| Polysaccharide deacetylase [Bacillus cereus BDRD-ST196], gi\|22864887... gi\|163863740, gi... - gi\|89206978\|ref\|ZP_01185528.1\| Polysaccharide deacetylase [Bacillus weihenstephanensis KBAB4], gi\|89...	5.0E-69	[1..299]	[1..299]
gi\|89203734, gi\|... - gi\|89203734\|ref\|ZP_01182334.1\| Polysaccharide deacetylase [Bacillus cereus subsp. cytotoxis NVH 391-...	6.0E-64	[1..299]	[1..299]
gi\|25490444 - pir\|\|F83950 hypothetical protein BH2406 [imported] - Bacillus halodurans (strain C-125) gi\|10175026, gi\|... - gi\|15614969\|ref\|NP_243272.1\| hypothetical protein BH2406 [Bacillus halodurans C-125], gi\|10175026\|db...	6.0E-60	[26..299]	[45..318]
gi\|221313872 - gi\|221313872\|ref\|ZP_03595677.1\| hypothetical protein BsubsN3_09127 [Bacillus subtilis subsp. subtili... gi\|221318795 - gi\|221318795\|ref\|ZP_03600089.1\| hypothetical protein BsubsJ_09056 [Bacillus subtilis subsp. subtilis... gi\|221323067 - gi\|221323067\|ref\|ZP_03604361.1\| hypothetical protein BsubsS_09167 [Bacillus subtilis subsp. subtilis... YLXY_BACSU - Uncharacterized protein ylxY OS=Bacillus subtilis GN=ylxY PE=3 SV=2 YLXY_BACSU - Uncharacterized protein YlxY OS=Bacillus subtilis (strain 168) GN=ylxY PE=3 SV=2	1.0E-59	[21..297]	[40..316]

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Predicted Domain #1

Region A:
Residues: [1-100]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKARILAYIC IFFLYVSVGS YSVFAQDNLY EEIQKHAKQY EIAPQNAMID KIWKATPGYN  60
   61 GRQVDMEASY NNMKKLKKFD QKHLEFKEVS PSVHLEDLSP

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [101-299]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 APIYRGHPNK KMVGLTINVA WGNEYLPRIL EILKKHDVKA TFFLEGRWVK ENLRFAKMIV  60
   61 DANQEVGNHS YTHPNMKTLS SDEIRDQLQK TNRMIEAATN QKVRWFAPPS GSFRDEVVKI 120
  121 ADDFQMGTIM WTVDTIDWKR PEPDVLLQRV MRKIHPGAIV LMHPTSSTTE ALDTMITKLK 180
  181 EQGYKVGNIT ELLDEKRVD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	44.69897
Match:	2c1gA
Description:	Structure of Streptococcus pneumoniae peptidoglycan deacetylase ( SpPgdA)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.54926008475976	bayes_pls_golite062009
deacetylase activity	1.07373873416936	bayes_pls_golite062009
hydrolase activity, hydrolyzing O-glycosyl compounds	1.04159714419468	bayes_pls_golite062009
hydrolase activity, acting on glycosyl bonds	0.78725677170464	bayes_pls_golite062009
hydrolase activity	0.600985675684655	bayes_pls_golite062009
mannosidase activity	0.32530435999467	bayes_pls_golite062009
binding	0.097268039040833	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: