YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30258429, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	343 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30258429, gi|....

Description	E-value	Query Range	Subject Range
gi\|42416889 - gi\|42416889\|gb\|AAS16326.1\| RecA [Mycobacterium septicum]	0.0	[2..340]	[6..344]
gi\|68198774, gi\|... - gi\|68233616\|ref\|ZP_00572731.1\| RecA bacterial DNA recombination protein [Frankia sp. EAN1pec], gi\|68...	0.0	[2..339]	[4..341]
RECA_MYCSM - (Q59560) Protein recA (Recombinase A) RECA_MYCS2 - Protein RecA OS=Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155) GN=recA PE=1 SV=1	0.0	[2..337]	[6..341]
gi\|42416895 - gi\|42416895\|gb\|AAS16329.1\| RecA [Mycobacterium porcinum]	0.0	[2..340]	[6..344]
gi\|41408946, gi\|... - gi\|41408946\|ref\|NP_961782.1\| recombinase A [Mycobacterium avium subsp. paratuberculosis K-10], gi\|41...	0.0	[2..340]	[64..402]
gi\|42416897 - gi\|42416897\|gb\|AAS16330.1\| RecA [Mycobacterium neworleansense]	0.0	[2..340]	[6..344]
gi\|42416873 - gi\|42416873\|gb\|AAS16318.1\| RecA [Mycobacterium fortuitum] gi\|65306701 - gi\|65306701\|gb\|AAY41903.1\| RecA [Mycobacterium conceptionense] gi\|65306701\|gb\|A... - RecA [Mycobacterium conceptionae]	0.0	[2..340]	[6..344]
gi\|42416877 - gi\|42416877\|gb\|AAS16320.1\| RecA [Mycobacterium goodii]	0.0	[2..337]	[6..341]
gi\|12084113, gi\|... - gi\|28948655\|pdb\|1MO6\|A Chain A, Reca-Datp-Mg Complex, gi\|28948654\|pdb\|1MO5\|A Chain A, Reca-Atp-Gamma...	0.0	[2..340]	[5..343]
gi\|89083852, gi\|... - gi\|89092117\|ref\|ZP_01165072.1\| recombinase A [Oceanospirillum sp. MED92], gi\|89083852\|gb\|EAR63069.1\|...	0.0	[2..343]	[3..344]

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Predicted Domain #1

Region A:
Residues: [1-343]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDRQAALDM ALKQIEKQFG KGSIMKLGEQ AERKVSTVSS GSLALDVALG VGGYPRGRII  60
   61 EIYGPESSGK TTVSLHAIAE VQRQGGQAAF IDAEHAMDPV YAQKLGVNID ELLLSQPDTG 120
  121 EQGLEIAEAL VRSGAVDIIV IDSVAALVPK AEIEGDMGDS HVGLQARLMS QALRKLSGAI 180
  181 NKSKTIAIFI NQIREKVGVM FGNPETTPGG RALKFYSTVR LEVRRAEQLK QGNDIVGNKT 240
  241 KVKVVKNKVA PPFRVAEVDI MYGEGISREG EILDMASELD IVQKSGAWYS YNEERLGQGR 300
  301 ENSKQFLKEN TDLREEIAFF IREHHGISED SGAEGMEDPN LLD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	105.0
Match:	1ubcA
Description:	RecA protein, ATPase-domain; RecA protein, C-terminal domain
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits