YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|21401753
Organism:	Bacillus anthracis str. A2012
Length:	509 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|21401753.

Description	E-value	Query Range	Subject Range
gi\|47568277, gi\|... - gi\|47568277\|ref\|ZP_00238980.1\| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus cereus G9241], gi\|...	0.0	[1..509]	[1..509]
MIAB_BACCZ - tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase OS=Bacillus cereus (strain ZK / E33L) GN=miaB... MIAB_BACHK - (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB OS=Bacillus thuringiensis subsp. konkukian ... MIAB_BACHK - tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase OS=Bacillus thuringiensis subsp. konkukian (s... gi\|196030849, gi... - gi\|196038441\|ref\|ZP_03105750.1\| conserved hypothetical protein [Bacillus cereus NVH0597-99], gi\|1960...	0.0	[1..509]	[1..509]
MIAB_BACCR - tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase OS=Bacillus cereus (strain ATCC 14579 / DSM 3...	0.0	[1..509]	[1..509]
MIAB_BACC1 - tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase OS=Bacillus cereus (strain ATCC 10987 / NRS 2...	0.0	[1..509]	[1..509]
gi\|65321098 - gi\|65321098\|ref\|ZP_00394057.1\| COG0621: 2-methylthioadenine synthetase [Bacillus anthracis str. A201...	0.0	[1..509]	[16..524]
MIAB_BACCN - tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase OS=Bacillus cytotoxicus (strain DSM 22905 / C...	0.0	[1..509]	[1..509]
MIAB_BACWK - tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase OS=Bacillus weihenstephanensis (strain KBAB4)...	0.0	[1..509]	[1..509]
MIAB_BACLD - tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase OS=Bacillus licheniformis (strain ATCC 14580 ...	0.0	[1..509]	[1..509]
gi\|74491542, gi\|... - gi\|75760978\|ref\|ZP_00740984.1\| tRNA 2-methylthioadenosine synthase [Bacillus thuringiensis serovar i...	0.0	[1..499]	[16..514]
gi\|221318823 - gi\|221318823\|ref\|ZP_03600117.1\| hypothetical protein BsubsJ_09216 [Bacillus subtilis subsp. subtilis... gi\|221313900 - gi\|221313900\|ref\|ZP_03595705.1\| hypothetical protein BsubsN3_09287 [Bacillus subtilis subsp. subtili... MIAB_BACSU - tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase OS=Bacillus subtilis (strain 168) GN=miaB PE=... MIAB_BACSU, YMCB... - UPF0004 protein ymcB OS=Bacillus subtilis GN=ymcB PE=3 SV=1, (Dimethylallyl)adenosine tRNA methylthi... gi\|221323095 - gi\|221323095\|ref\|ZP_03604389.1\| hypothetical protein BsubsS_09327 [Bacillus subtilis subsp. subtilis...	0.0	[1..509]	[1..509]

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Predicted Domain #1

Region A:
Residues: [1-97]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNEQQRLASQ QVNSSTKKEE KDYSKYFESV YQPPSLKDAK KRGKEEVKIE RDFGLPEEFR  60
   61 NFGTGRKFYI RTYGCQMNEH DTEVMAGIFT ALGYEPT

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [98-414]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FSTEDADVVL LNTCAIRENA ENKVFGELGH LKSLKRRNSD LLIGVCGCMS QEESVVNKIM  60
   61 QKNQHVDMVF GTHNIHRLPY ILKDAMFSKE TVVEVWSKEG DVIENLPKVR RGDIKAWVNI 120
  121 MYGCDKFCTY CIVPYTRGKE RSRRPEDIIQ EIRHLAANGY KEITLLGQNV NAYGKDFEDI 180
  181 EYGLGDLMDE LRKVDIARIR FTTSHPRDFD DHLIEVLGKG GNLVEHIHLP VQSGSTEMLK 240
  241 IMARKYSREH YLELVRKIKE AIPNAVLTTD IIVGFPNETD EQFEETMSLY REVGFDTAFT 300
  301 FIYSPREGTP AAKMKDN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	7.154902
Match:	2a5hA
Description:	2.1 Angstrom X-ray crystal structure of lysine-2,3-aminomutase from Clostridium subterminale SB4, with Michaelis analog (L-alpha-lysine external aldimine form of pyridoxal-5'-phosphate).
Matching Structure (courtesy of the PDB):

Predicted Domain #3

Region A:
Residues: [415-509]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VPMEVKKERL QRLNALVNKL AIEKNDRYKG QIVEVLVDGE SKNNPEVLAG YTRTNKLVNF  60
   61 VAPKSLIGQL VKIKVTDAKT WSLNGELVEE PIEVE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	52.69897
Match:	2qgqA
Description:	No description for 2qgqA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits