YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30258385, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	198 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30258385, gi|....

Description	E-value	Query Range	Subject Range
gi\|30021834, gi\|... - gi\|30021834\|ref\|NP_833465.1\| ADA regulatory protein [Bacillus cereus ATCC 14579], gi\|29897390\|gb\|AAP... gi\|228799692, gi... - gi\|228959949\|ref\|ZP_04121614.1\| Methylphosphotriester-DNA alkyltransferase [Bacillus thuringiensis s... gi\|228636945, gi... - gi\|229146312\|ref\|ZP_04274683.1\| Methylphosphotriester-DNA alkyltransferase [Bacillus cereus BDRD-ST2... gi\|229129017, gi... - gi\|229129017\|ref\|ZP_04257990.1\| Methylphosphotriester-DNA alkyltransferase [Bacillus cereus BDRD-Cer... gi\|228672206, gi... - gi\|229111212\|ref\|ZP_04240766.1\| Methylphosphotriester-DNA alkyltransferase [Bacillus cereus Rock1-15...	3.0E-47	[1..198]	[1..198]
gi\|218542775, gi... - gi\|218898841\|ref\|YP_002447252.1\| Ada regulatory protein/6-O-methylguanine-DNA methyltransferase [Bac... gi\|75759850, gi\|... - gi\|75759850\|ref\|ZP_00739925.1\| ADA regulatory protein [Bacillus thuringiensis serovar israelensis AT...	1.0E-46	[1..198]	[1..198]
gi\|51975219, gi\|... - gi\|52141750\|ref\|YP_085079.1\| AraC family transcriptional regulator [Bacillus cereus E33L], gi\|519752...	2.0E-46	[1..198]	[1..198]
gi\|65321064, gi\|... - gi\|65321064\|ref\|ZP_00394023.1\| COG2169: Adenosine deaminase [Bacillus anthracis str. A2012], ref\|NP_...	8.0E-46	[1..198]	[1..198]
gi\|196044461, gi... - gi\|196044461\|ref\|ZP_03111696.1\| Ada regulatory protein/6-O-methylguanine-DNA methyltransferase [Baci... gi\|196038452, gi... - gi\|196038452\|ref\|ZP_03105761.1\| Ada regulatory protein/6-O-methylguanine-DNA methyltransferase [Baci... gi\|49329911, gi\|... - gi\|49478355\|ref\|YP_037805.1\| AraC family transcriptional regulator [Bacillus thuringiensis serovar k... gi\|228843281, gi... - gi\|228916371\|ref\|ZP_04079940.1\| Methylphosphotriester-DNA alkyltransferase [Bacillus thuringiensis s... gi\|225788439, gi... - gi\|225865718\|ref\|YP_002751096.1\| Ada regulatory protein/6-O-methylguanine-DNA methyltransferase [Bac...	1.0E-45	[1..198]	[1..198]
gi\|42738749, gi\|... - gi\|42782822\|ref\|NP_980069.1\| Ada regulatory protein/6-O-methylguanine-DNA methyltransferase [Bacillu...	4.0E-45	[1..198]	[1..198]
gi\|47555060, gi\|... - gi\|47568232\|ref\|ZP_00238935.1\| transcriptional regulator, AraC family [Bacillus cereus G9241], gi\|47... gi\|229157317, gi... - gi\|229157317\|ref\|ZP_04285395.1\| Methylphosphotriester-DNA alkyltransferase [Bacillus cereus ATCC 434... gi\|228772826, gi... - gi\|228986877\|ref\|ZP_04147004.1\| Methylphosphotriester-DNA alkyltransferase [Bacillus thuringiensis s...	2.0E-44	[1..196]	[1..196]
gi\|89154279, gi\|... - gi\|89207780\|ref\|ZP_01186312.1\| Helix-turn-helix, AraC type:Ada, metal-binding [Bacillus weihenstepha...	5.0E-43	[1..196]	[1..196]
gi\|29374915, gi\|... - gi\|29374915\|ref\|NP_814068.1\| ada regulatory protein, putative [Enterococcus faecalis V583], gi\|29342...	7.0E-40	[2..185]	[1..184]
gi\|56911160, gi\|... - gi\|56964917\|ref\|YP_176648.1\| methylphosphotriester-DNA alkyltransferase [Bacillus clausii KSM-K16], ...	1.0E-38	[2..190]	[21..209]

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Predicted Domain #1

Region A:
Residues: [1-125]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHNEGVTLTN EHWQAIIHND SSYDSKFFYA VKSTGVFCRP SCKSRIPNKN NVRIFHHAEQ  60
   61 ALSENFRPCK RCKPNGLTLP NEEWVEQIKE YIEKHFDEAL TLDILAEMCH GSPFHLQRTF 120
  121 KKMTA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	21.0
Match:	1zgwA
Description:	NMR structure of E. Coli Ada protein in complex with DNA
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [126-198]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ISPIEYIQQF RIVKAAEHLL HTNQPIKEIS TAVGIENPEY FATLFKKKTG FTPTEYRKKN  60
   61 EMKERYNNEF LQK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	25.0
Match:	1xs9A
Description:	A MODEL OF THE TERNARY COMPLEX FORMED BETWEEN MARA, THE ALPHA-CTD OF RNA POLYMERASE AND DNA
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits