YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30263738, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	340 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30263738, gi|....

Description	E-value	Query Range	Subject Range
gi\|67987421, gi\|... - gi\|69285730\|ref\|ZP_00617069.1\| transport system permease protein [Kineococcus radiotolerans SRS30216...	2.0E-65	[31..339]	[580..881]
gi\|76167036, gi\|... - gi\|76257950\|ref\|ZP_00765607.1\| transport system permease protein [Chloroflexus aurantiacus J-10-fl],...	3.0E-65	[4..338]	[60..387]
gi\|214034358, gi... - gi\|254479701\|ref\|ZP_05092994.1\| ABC transporter, FeCT family, permease protein [Carboxydibrachium pa... gi\|20808280 - gi\|20808280\|ref\|NP_623451.1\| ABC-type cobalamin/Fe3+-siderophores transport systems, permease compon... gi\|20516881, gi\|... - gi\|20808280\|ref\|NP_623451.1\| ABC-type cobalamin/Fe3+-siderophores transport systems, permease compon...	2.0E-64	[7..338]	[18..351]
gi\|114845489, gi... - gi\|167039782\|ref\|YP_001662767.1\| transport system permease protein [Thermoanaerobacter sp. X514], gi... gi\|167037070, gi... - gi\|76796307\|ref\|ZP_00778672.1\| transport system permease protein [Thermoanaerobacter ethanolicus ATC... gi\|241884179, gi... - gi\|241903412\|ref\|ZP_04788136.1\| transport system permease protein [Thermoanaerobacter brockii subsp.... gi\|242230699, gi... - gi\|242257758\|ref\|ZP_04802610.1\| transport system permease protein [Thermoanaerobacter sp. X513], gi\|...	2.0E-64	[7..338]	[18..351]
gi\|42782819, gi\|... - gi\|42782819\|ref\|NP_980066.1\| iron compound ABC transporter, permease protein [Bacillus cereus ATCC 1...	4.0E-64	[1..340]	[1..340]
gi\|152024875, gi... - gi\|89202581\|ref\|ZP_01181297.1\| transport system permease protein [Bacillus cereus subsp. cytotoxis N...	5.0E-64	[1..340]	[1..340]
gi\|47555056, gi\|... - gi\|47568228\|ref\|ZP_00238931.1\| ferrichrome ABC transporter, permease protein [Bacillus cereus G9241]...	6.0E-64	[1..340]	[1..340]
gi\|49329907, gi\|... - gi\|49478351\|ref\|YP_037801.1\| iron compound ABC transporter, permease [Bacillus thuringiensis serovar...	9.0E-64	[1..340]	[1..340]
gi\|89154275, gi\|... - gi\|89207776\|ref\|ZP_01186308.1\| transport system permease protein [Bacillus weihenstephanensis KBAB4]...	1.0E-63	[1..340]	[1..340]
gi\|30021830, gi\|... - gi\|30021830\|ref\|NP_833461.1\| Iron(III) dicitrate transport system permease protein fecC [Bacillus ce... gi\|218163142, gi... - gi\|218235185\|ref\|YP_002368539.1\| iron compound ABC transporter, permease protein [Bacillus cereus B4...	1.0E-63	[1..340]	[1..340]

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Predicted Domain #1

Region A:
Residues: [1-340]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLKSSSQRFG MTMGISIFLI LCAIYISLTN GTFDITITDV CKTLLRIDPV PDHDLVIFEF  60
   61 RLPRIIIAGL VGLGLGVAGA VIQGITRNGL ADPGILGVNA GAGTAIVIFM FFFQGQLKST 120
  121 DWVSIMMMPM FGLVGGLGAA IIIYLFSWKN GKLDSQRLLL TGIAIGSGFG AFSMYLSLKM 180
  181 KSTDFEMAAV WVSGSIYSAN WKYIIAMLPW LIILIPLIQK KAYLLDLFQL EETSITSLGV 240
  241 SVEREKSILL LSSIGLVSAC VAVSGSIGFI GLMAPHIAKR LVGIQHKHII PTCGVIGMFL 300
  301 VITSDFIAKT VFTPVELPVG IVISIVGVPY FLYLLYKAKA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	51.221849
Match:	2nq2A
Description:	No description for 2nq2A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits